A (fire)cloud-based DNA methylation data preprocessing and quality control platform

著者: Kangeyan, Divy, Dunford, Andrew, Iyer, Sowmya, Stewart, Chip, Hanna, Megan, Getz, Gad, Aryee, Martin J.
出版年 BMC Bioinformatics (2019)

The perils of recreational marijuana use: relationships with mental health among emergency department patients

著者: Marco, Catherine A., Detherage, John Paul, LaFountain, Ashley, Hanna, Megan, Anderson, Justin, Rhee, Rachel, Ziegman, Jacqueline, Mann, Dennis
出版年 J Am Coll Emerg Physicians Open (2020)

Comparison of Prevalence and Types of Mutations in Lung Cancers Among Black and White Populations

著者: Campbell, Joshua D., Lathan, Christopher, Sholl, Lynette, Ducar, Matthew, Vega, Mikenah, Sunkavalli, Ashwini, Lin, Ling, Hanna, Megan, Schubert, Laura, Thorner, Aaron, Faris, Nicholas, Williams, David R., Osarogiagbon, Raymond U., van Hummelen, Paul, Meyerson, Matthew, MacConaill, Laura
出版年 JAMA Oncol (2017)

Massively parallel sequencing of formalin-fixed paraffin-embedded tissues

著者: Erlich, Rachel L, Palescandolo, Emanuele, Jones, Robert T, Sunkavalli, Ashwini, Raza, Alina, Ducar, Matthew, Hatton, Charles, Go, Christina, Roden, Christine, Hanna, Megan, Mills, Adri, Adusumilli, Ravali, Kumar, Prateek, Brastianos, Priscilla K, Meyerson, Matthew L, Hahn, William C, MacConaill, Laura E, Van Hummelen, Paul
出版事項 2012

Integrative Genomic Analysis Implicates Gain of PIK3CA at 3q26 and MYC at 8q24 in Chronic Lymphocytic Leukemia

著者: Brown, Jennifer R, Hanna, Megan, Tesar, Bethany, Werner, Lillian, Pochet, Nathalie, Asara, John M., Wang, Yaoyu E, Cin, Paola dal, Fernandes, Stacey M, Thompson, Christina, MacConaill, Laura, Wu, Catherine J, Van de Peer, Yves, Correll, Mick, Regev, Aviv, Neuberg, Donna, Freedman, Arnold S
出版事項 2012

Activating mutations in ALK provide a therapeutic target in neuroblastoma

著者: George, Rani E., Sanda, Takaomi, Hanna, Megan, Fröhling, Stefan, Luther, William, Zhang, Jianming, Ahn, Yebin, Zhou, Wenjun, London, Wendy B., McGrady, Patrick, Xue, Liquan, Zozulya, Sergey, Gregor, Vlad, Webb, Thomas R., Gray, Nathanael S., Gilliland, D. Gary, Diller, Lisa, Greulich, Heidi, Morris, Stephan W., Meyerson, Matthew, Look, A. Thomas
出版事項 2008

Colorectal Cancers from Distinct Ancestral Populations Show Variations in BRAF Mutation Frequency

著者: Hanna, Megan C., Go, Christina, Roden, Christine, Jones, Robert T., Pochanard, Panisa, Javed, Ahmed Yasir, Javed, Awais, Mondal, Chandrani, Palescandolo, Emanuele, Van Hummelen, Paul, Hatton, Charles, Bass, Adam J., Chun, Sung Min, Na, Deuk Chae, Kim, Tae-Im, Jang, Se Jin, Osarogiagbon, Raymond U., Hahn, William C., Meyerson, Matthew, Garraway, Levi A., MacConaill, Laura E.
出版事項 2013

Drug-sensitive FGFR2 mutations in endometrial carcinoma

著者: Dutt, Amit, Salvesen, Helga B., Chen, Tzu-Hsiu, Ramos, Alex H., Onofrio, Robert C., Hatton, Charlie, Nicoletti, Richard, Winckler, Wendy, Grewal, Rupinder, Hanna, Megan, Wyhs, Nicolas, Ziaugra, Liuda, Richter, Daniel J., Trovik, Jone, Engelsen, Ingeborg B., Stefansson, Ingunn M., Fennell, Tim, Cibulskis, Kristian, Zody, Michael C., Akslen, Lars A., Gabriel, Stacey, Wong, Kwok-Kin, Sellers, William R., Meyerson, Matthew, Greulich, Heidi
出版事項 2008

Loss of ATRX, Genome Instability, and an Altered DNA Damage Response Are Hallmarks of the Alternative Lengthening of Telomeres Pathway

著者: Lovejoy, Courtney A., Li, Wendi, Reisenweber, Steven, Thongthip, Supawat, Bruno, Joanne, de Lange, Titia, De, Saurav, Petrini, John H. J., Sung, Patricia A., Jasin, Maria, Rosenbluh, Joseph, Zwang, Yaara, Weir, Barbara A., Hatton, Charlie, Ivanova, Elena, Macconaill, Laura, Hanna, Megan, Hahn, William C., Lue, Neal F., Reddel, Roger R., Jiao, Yuchen, Kinzler, Kenneth, Vogelstein, Bert, Papadopoulos, Nickolas, Meeker, Alan K.
出版事項 2012

Structural, biochemical and clinical characterization of epidermal growth factor receptor (EGFR) exon 20 insertion mutations in lung cancer

著者: Yasuda, Hiroyuki, Park, Eunyoung, Yun, Cai-Hong, Sng, Natasha J., Lucena-Araujo, Antonio R., Yeo, Wee-Lee, Huberman, Mark S., Cohen, David W., Nakayama, Sohei, Ishioka, Kota, Yamaguchi, Norihiro, Hanna, Megan, Oxnard, Geoffrey R., Lathan, Christopher S., Moran, Teresa, Sequist, Lecia V., Chaft, Jamie E., Riely, Gregory J., Arcila, Maria E., Soo, Ross A., Meyerson, Matthew, Eck, Michael J., Kobayashi, Susumu S., Costa, Daniel B.
出版事項 2013

Toil enables reproducible, open source, big biomedical data analyses

著者: Vivian, John, Rao, Arjun Arkal, Nothaft, Frank Austin, Ketchum, Christopher, Armstrong, Joel, Novak, Adam, Pfeil, Jacob, Narkizian, Jake, Deran, Alden D, Musselman-Brown, Audrey, Schmidt, Hannes, Amstutz, Peter, Craft, Brian, Goldman, Mary, Rosenbloom, Kate, Cline, Melissa, O’Connor, Brian, Hanna, Megan, Birger, Chet, Kent, W James, Patterson, David A, Joseph, Anthony D, Zhu, Jingchun, Zaranek, Sasha, Getz, Gad, Haussler, David, Paten, Benedict
出版年 Nat Biotechnol (2017)

Profiling Critical Cancer Gene Mutations in Clinical Tumor Samples

著者: MacConaill, Laura E., Campbell, Catarina D., Kehoe, Sarah M., Bass, Adam J., Hatton, Charles, Niu, Lili, Davis, Matt, Yao, Keluo, Hanna, Megan, Mondal, Chandrani, Luongo, Lauren, Emery, Caroline M., Baker, Alissa C., Philips, Juliet, Goff, Deborah J., Fiorentino, Michelangelo, Rubin, Mark A., Polyak, Kornelia, Chan, Jennifer, Wang, Yuexiang, Fletcher, Jonathan A., Santagata, Sandro, Corso, Gianni, Roviello, Franco, Shivdasani, Ramesh, Kieran, Mark W., Ligon, Keith L., Stiles, Charles D., Hahn, William C., Meyerson, Matthew L., Garraway, Levi A.
出版事項 2009

Correction: Profiling Critical Cancer Gene Mutations in Clinical Tumor Samples

著者: MacConaill, Laura E., Campbell, Catarina D., Kehoe, Sarah M., Bass, Adam J., Hatton, Charles, Niu, Lili, Davis, Matt, Yao, Keluo, Hanna, Megan, Mondal, Chandrani, Luongo, Lauren, Emery, Caroline M., Baker, Alissa C., Philips, Juliet, Goff, Deborah J., Fiorentino, Michelangelo, Rubin, Mark A., Polyak, Kornelia, Chan, Jennifer, Wang, Yuexiang, Fletcher, Jonathan A., Santagata, Sandro, Corso, Gianni, Roviello, Franco, Shivdasani, Ramesh, Kieran, Mark W., Ligon, Keith L., Stiles, Charles D., Hahn, William C., Meyerson, Matthew L., Garraway, Levi A.
出版事項 2009

Correction: Profiling Critical Cancer Gene Mutations in Clinical Tumor Samples

著者: MacConaill, Laura E., Campbell, Catarina D., Kehoe, Sarah M., Bass, Adam J., Hatton, Charles, Niu, Lili, Davis, Matt, Yao, Keluo, Hanna, Megan, Mondal, Chandrani, Luongo, Lauren, Emery, Caroline M., Baker, Alissa C., Philips, Juliet, Goff, Deborah J., Fiorentino, Michelangelo, Rubin, Mark A., Polyak, Kornelia, Chan, Jennifer, Wang, Yuexiang, Fletcher, Jonathan A., Santagata, Sandro, Corso, Gianni, Roviello, Franco, Shivdasani, Ramesh, Kieran, Mark W., Ligon, Keith L., Stiles, Charles D., Hahn, William C., Meyerson, Matthew L., Garraway, Levi A.
出版事項 2010

Predicting drug susceptibility of non–small cell lung cancers based on genetic lesions

著者: Sos, Martin L., Michel, Kathrin, Zander, Thomas, Weiss, Jonathan, Frommolt, Peter, Peifer, Martin, Li, Danan, Ullrich, Roland, Koker, Mirjam, Fischer, Florian, Shimamura, Takeshi, Rauh, Daniel, Mermel, Craig, Fischer, Stefanie, Stückrath, Isabel, Heynck, Stefanie, Beroukhim, Rameen, Lin, William, Winckler, Wendy, Shah, Kinjal, LaFramboise, Thomas, Moriarty, Whei F., Hanna, Megan, Tolosi, Laura, Rahnenführer, Jörg, Verhaak, Roel, Chiang, Derek, Getz, Gad, Hellmich, Martin, Wolf, Jürgen, Girard, Luc, Peyton, Michael, Weir, Barbara A., Chen, Tzu-Hsiu, Greulich, Heidi, Barretina, Jordi, Shapiro, Geoffrey I., Garraway, Levi A., Gazdar, Adi F., Minna, John D., Meyerson, Matthew, Wong, Kwok-Kin, Thomas, Roman K.
出版事項 2009

Subtype-specific genomic alterations define new targets for soft tissue sarcoma therapy

著者: Barretina, Jordi, Taylor, Barry S., Banerji, Shantanu, Ramos, Alexis H., Lagos-Quintana, Mariana, DeCarolis, Penelope L., Shah, Kinjal, Socci, Nicholas D., Weir, Barbara A., Ho, Alan, Chiang, Derek Y., Reva, Boris, Mermel, Craig, Getz, Gad, Antipin, Yevgenyi, Beroukhim, Rameen, Major, John E., Hatton, Charlie, Nicoletti, Richard, Hanna, Megan, Sharpe, Ted, Fennell, Tim, Cibulskis, Kristian, Onofrio, Robert C., Saito, Tsuyoshi, Shukla, Neerav, Lau, Christopher, Nelander, Sven, Silver, Serena, Sougnez, Carrie, Viale, Agnes, Winckler, Wendy, Maki, Robert G., Garraway, Levi A., Lash, Alex, Greulich, Heidi, Root, David, Sellers, William R., Schwartz, Gary K., Antonescu, Cristina R., Lander, Eric S., Varmus, Harold E., Ladanyi, Marc, Sander, Chris, Meyerson, Matthew, Singer, Samuel
出版事項 2010

Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers

著者: Parikh, Aparna R., Leshchiner, Ignaty, Elagina, Liudmila, Goyal, Lipika, Levovitz, Chaya, Siravegna, Giulia, Livitz, Dimitri, Rhrissorrakrai, Kahn, Martin, Elizabeth E., Van Seventer, Emily E., Hanna, Megan, Slowik, Kara, Utro, Filippo, Pinto, Christopher J., Wong, Alicia, Danysh, Brian P., de la Cruz, Ferran Fece, Fetter, Isobel J., Nadres, Brandon, Shahzade, Heather A., Allen, Jill N., Blaszkowsky, Lawrence S., Clark, Jeffrey W., Giantonio, Bruce, Murphy, Janet E., Nipp, Ryan D., Roeland, Eric, Ryan, David P., Weekes, Colin D., Kwak, Eunice L., Faris, Jason E., Wo, Jennifer Y., Aguet, François, Dey-Guha, Ipsita, Hazar-Rethinam, Mehlika, Dias-Santagata, Dora, Ting, David T., Zhu, Andrew X., Hong, Theodore S., Golub, Todd R., Iafrate, A. John, Adalsteinsson, Viktor A., Bardelli, Alberto, Parida, Laxmi, Juric, Dejan, Getz, Gad, Corcoran, Ryan B.
出版年 Nat Med (2019)

Mutations in the DDR2 kinase gene identify a novel therapeutic target in squamous cell lung cancer

著者: Hammerman, Peter S, Sos, Martin L, Ramos, Alex H, Xu, Chunxiao, Dutt, Amit, Zhou, Wenjun, Brace, Lear E, Woods, Brittany A, Lin, Wenchu, Zhang, Jianming, Deng, Xianming, Lim, Sang Min, Heynck, Stefanie, Peifer, Martin, Simard, Jeffrey R, Lawrence, Michael S, Onofrio, Robert C, Salvesen, Helga B, Seidel, Danila, Zander, Thomas, Heuckmann, Johannes M, Soltermann, Alex, Moch, Holger, Koker, Mirjam, Leenders, Frauke, Gabler, Franziska, Querings, Silvia, Ansén, Sascha, Brambilla, Elisabeth, Brambilla, Christian, Lorimier, Philippe, Brustugun, Odd Terje, Helland, Åslaug, Petersen, Iver, Clement, Joachim H, Groen, Harry, Timens, Wim, Sietsma, Hannie, Stoelben, Erich, Wolf, Jürgen, Beer, David G, Tsao, Ming Sound, Hanna, Megan, Hatton, Charles, Eck, Michael J, Janne, Pasi A, Johnson, Bruce E, Winckler, Wendy, Greulich, Heidi, Bass, Adam J, Cho, Jeonghee, Rauh, Daniel, Gray, Nathanael S, Wong, Kwok-Kin, Haura, Eric B, Thomas, Roman K, Meyerson, Matthew
出版事項 2011

The genetic landscape of high-risk neuroblastoma

著者: Pugh, Trevor J., Morozova, Olena, Attiyeh, Edward F., Asgharzadeh, Shahab, Wei, Jun S., Auclair, Daniel, Carter, Scott L., Cibulskis, Kristian, Hanna, Megan, Kiezun, Adam, Kim, Jaegil, Lawrence, Michael S., Lichenstein, Lee, McKenna, Aaron, Pedamallu, Chandra Sekhar, Ramos, Alex H., Shefler, Erica, Sivachenko, Andrey, Sougnez, Carrie, Stewart, Chip, Ally, Adrian, Birol, Inanc, Chiu, Readman, Corbett, Richard D., Hirst, Martin, Jackman, Shaun D., Kamoh, Baljit, Khodabakshi, Alireza Hadj, Krzywinski, Martin, Lo, Allan, Moore, Richard A., Mungall, Karen L., Qian, Jenny, Tam, Angela, Thiessen, Nina, Zhao, Yongjun, Cole, Kristina A., Diamond, Maura, Diskin, Sharon J., Mosse, Yael P., Wood, Andrew C., Ji, Lingyun, Sposto, Richard, Badgett, Thomas, London, Wendy B., Moyer, Yvonne, Gastier-Foster, Julie M., Smith, Malcolm A., Auvil, Jaime M. Guidry, Gerhard, Daniela S., Hogarty, Michael D., Jones, Steven J. M., Lander, Eric S., Gabriel, Stacey B., Getz, Gad, Seeger, Robert C., Khan, Javed, Marra, Marco A., Meyerson, Matthew, Maris, John M.
出版事項 2013

Characterizing the cancer genome in lung adenocarcinoma

著者: Weir, Barbara A., Woo, Michele S., Getz, Gad, Perner, Sven, Ding, Li, Beroukhim, Rameen, Lin, William M., Province, Michael A., Kraja, Aldi, Johnson, Laura A., Shah, Kinjal, Sato, Mitsuo, Thomas, Roman K., Barletta, Justine A., Borecki, Ingrid B., Broderick, Stephen, Chang, Andrew C., Chiang, Derek Y., Chirieac, Lucian R., Cho, Jeonghee, Fujii, Yoshitaka, Gazdar, Adi F., Giordano, Thomas, Greulich, Heidi, Hanna, Megan, Johnson, Bruce E., Kris, Mark G., Lash, Alex, Lin, Ling, Lindeman, Neal, Mardis, Elaine R., McPherson, John D., Minna, John D., Morgan, Margaret B., Nadel, Mark, Orringer, Mark B., Osborne, John R., Ozenberger, Brad, Ramos, Alex H., Robinson, James, Roth, Jack A., Rusch, Valerie, Sasaki, Hidefumi, Shepherd, Frances, Sougnez, Carrie, Spitz, Margaret R., Tsao, Ming-Sound, Twomey, David, Verhaak, Roel G. W., Weinstock, George M., Wheeler, David A., Winckler, Wendy, Yoshizawa, Akihiko, Yu, Soyoung, Zakowski, Maureen F., Zhang, Qunyuan, Beer, David G., Wistuba, Ignacio I., Watson, Mark A., Garraway, Levi A., Ladanyi, Marc, Travis, William D., Pao, William, Rubin, Mark A., Gabriel, Stacey B., Gibbs, Richard A., Varmus, Harold E., Wilson, Richard K., Lander, Eric S., Meyerson, Matthew
出版事項 2007