Next generation sequencing based approaches to epigenomics

Por Hirst, Martin, Marra, Marco A.
Publicado em 2010

Naturally Occurring Human Immunodeficiency Virus Type 1 Long Terminal Repeats Have a Frequently Observed Duplication That Binds RBF-2 and Represses Transcription

Por Estable, Mario Clemente, Bell, Brendan, Hirst, Martin, Sadowski, Ivan
Publicado em 1998

Draft Genome Sequences of Six Rhodobacter capsulatus Strains, YW1, YW2, B6, Y262, R121, and DE442

Por Ding, Hao, Moksa, Michelle M., Hirst, Martin, Beatty, J. Thomas
Publicado em 2014

A two-hybrid system for transactivator bait proteins

Por Hirst, Martin, Ho, Cynthia, Sabourin, Luc, Rudnicki, Michael, Penn, Linda, Sadowski, Ivan
Publicado em 2001

Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation

Por Shivaswamy, Sushma, Bhinge, Akshay, Zhao, Yongjun, Jones, Steven, Hirst, Martin, Iyer, Vishwanath R
Publicado em 2008

Massively parallel sequencing of the polyadenylated transcriptome of C. elegans

Por Hillier, LaDeana W., Reinke, Valerie, Green, Philip, Hirst, Martin, Marra, Marco A., Waterston, Robert H.
Publicado em 2009

Isolation and identification of L-dopa decarboxylase as a protein that binds to and enhances transcriptional activity of the androgen receptor using the repressed transactivator ye...

Por Wafa, Latif A, Cheng, Helen, Rao, Mira A, Nelson, Colleen C, Cox, Michael, Hirst, Martin, Sadowski, Ivan, Rennie, Paul S
Publicado em 2003

DNA template strand sequencing of single-cells maps genomic rearrangements at high resolution

Por Falconer, Ester, Hills, Mark, Naumann, Ulrike, Poon, Steven S S, Chavez, Elizabeth A, Sanders, Ashley D, Zhao, Yongjun, Hirst, Martin, Lansdorp, Peter M
Publicado em 2012

Draft Genome Sequence of the Pelagic Photoferrotroph Chlorobium phaeoferrooxidans

Por Crowe, Sean A., Hahn, Aria S., Morgan-Lang, Connor, Thompson, Katherine J., Simister, Rachel L., Llirós, Marc, Hirst, Martin, Hallam, Steven J.
Publicado no Genome Announc (2017)

Next-generation tag sequencing for cancer gene expression profiling

Por Morrissy, A. Sorana, Morin, Ryan D., Delaney, Allen, Zeng, Thomas, McDonald, Helen, Jones, Steven, Zhao, Yongjun, Hirst, Martin, Marra, Marco A.
Publicado em 2009

Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags

Por Shin, Heesun, Hirst, Martin, Bainbridge, Matthew N, Magrini, Vincent, Mardis, Elaine, Moerman, Donald G, Marra, Marco A, Baillie, David L, Jones, Steven JM
Publicado em 2008

Novel expressed sequences identified in a model of androgen independent prostate cancer

Por Quayle, Steven N, Hare, Heidi, Delaney, Allen D, Hirst, Martin, Hwang, Dorothy, Schein, Jacqueline E, Jones, Steven JM, Marra, Marco A, Sadar, Marianne D
Publicado em 2007

Analysis of the clonal growth and differentiation dynamics of primitive barcoded human cord blood cells in NSG mice

Por Cheung, Alice M. S., Nguyen, Long V., Carles, Annaick, Beer, Philip, Miller, Paul H., Knapp, David J. H. F., Dhillon, Kiran, Hirst, Martin, Eaves, Connie J.
Publicado em 2013

MEF2B mutations in non-Hodgkin lymphoma dysregulate cell migration by decreasing MEF2B target gene activation

Por Pon, Julia R., Wong, Jackson, Saberi, Saeed, Alder, Olivia, Moksa, Michelle, Grace Cheng, S. -W., Morin, Gregg B., Hoodless, Pamela A., Hirst, Martin, Marra, Marco A.
Publicado no Nat Commun (2015)

Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing data

Por Ding, Jiarui, Bashashati, Ali, Roth, Andrew, Oloumi, Arusha, Tse, Kane, Zeng, Thomas, Haffari, Gholamreza, Hirst, Martin, Marra, Marco A., Condon, Anne, Aparicio, Samuel, Shah, Sohrab P.
Publicado em 2012

Putative BRAF activating fusion in a medullary thyroid cancer

Por Kasaian, Katayoon, Wiseman, Sam M., Walker, Blair A., Schein, Jacqueline E., Hirst, Martin, Moore, Richard A., Mungall, Andrew J., Marra, Marco A., Jones, Steven J.M.
Publicado no Cold Spring Harb Mol Case Stud (2016)

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods

Por Stevens, Michael, Cheng, Jeffrey B., Li, Daofeng, Xie, Mingchao, Hong, Chibo, Maire, Cécile L., Ligon, Keith L., Hirst, Martin, Marra, Marco A., Costello, Joseph F., Wang, Ting
Publicado em 2013

DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements and chimaeric transcripts in mouse ES cells

Por Karimi, Mohammad M., Goyal, Preeti, Maksakova, Irina A., Bilenky, Misha, Leung, Danny, Tang, Jie Xin, Shinkai, Yoichi, Mager, Dixie L., Jones, Steven, Hirst, Martin, Lorincz, Matthew C.
Publicado em 2011

The genomic and transcriptomic landscape of anaplastic thyroid cancer: implications for therapy

Por Kasaian, Katayoon, Wiseman, Sam M., Walker, Blair A., Schein, Jacqueline E., Zhao, Yongjun, Hirst, Martin, Moore, Richard A., Mungall, Andrew J., Marra, Marco A., Jones, Steven JM
Publicado no BMC Cancer (2015)

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data

Por Roth, Andrew, Ding, Jiarui, Morin, Ryan, Crisan, Anamaria, Ha, Gavin, Giuliany, Ryan, Bashashati, Ali, Hirst, Martin, Turashvili, Gulisa, Oloumi, Arusha, Marra, Marco A., Aparicio, Samuel, Shah, Sohrab P.
Publicado em 2012