ddClone: joint statistical inference of clonal populations from single cell and bulk tumour sequencing data

Por Salehi, Sohrab, Steif, Adi, Roth, Andrew, Aparicio, Samuel, Bouchard-Côté, Alexandre, Shah, Sohrab P.
Publicado no Genome Biol (2017)

Atlas – a data warehouse for integrative bioinformatics

Por Shah, Sohrab P, Huang, Yong, Xu, Tao, Yuen, Macaire MS, Ling, John, Ouellette, BF Francis
Publicado em 2005

Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas

Por Mathelier, Anthony, Lefebvre, Calvin, Zhang, Allen W, Arenillas, David J, Ding, Jiarui, Wasserman, Wyeth W, Shah, Sohrab P
Publicado no Genome Biol (2015)

Model-based clustering of array CGH data

Por Shah, Sohrab P., Cheung, K-John, Johnson, Nathalie A., Alain, Guillaume, Gascoyne, Randy D., Horsman, Douglas E., Ng, Raymond T., Murphy, Kevin P.
Publicado em 2009

PyClone: Statistical inference of clonal population structure in cancer

Por Roth, Andrew, Khattra, Jaswinder, Yap, Damian, Wan, Adrian, Laks, Emma, Biele, Justina, Ha, Gavin, Aparicio, Samuel, Bouchard-Côté, Alexandre, Shah, Sohrab P.
Publicado no Nat Methods (2014)

DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer

Por Bashashati, Ali, Haffari, Gholamreza, Ding, Jiarui, Ha, Gavin, Lui, Kenneth, Rosner, Jamie, Huntsman, David G, Caldas, Carlos, Aparicio, Samuel A, Shah, Sohrab P
Publicado em 2012

Pegasys: software for executing and integrating analyses of biological sequences

Por Shah, Sohrab P, He, David YM, Sawkins, Jessica N, Druce, Jeffrey C, Quon, Gerald, Lett, Drew, Zheng, Grace XY, Xu, Tao, Ouellette, BF Francis
Publicado em 2004

Ulysses - an application for the projection of molecular interactions across species

Por Kemmer, Danielle, Huang, Yong, Shah, Sohrab P, Lim, Jonathan, Brumm, Jochen, Yuen, Macaire MS, Ling, John, Xu, Tao, Wasserman, Wyeth W, Ouellette, BF Francis
Publicado em 2005

Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing data

Por Ding, Jiarui, Bashashati, Ali, Roth, Andrew, Oloumi, Arusha, Tse, Kane, Zeng, Thomas, Haffari, Gholamreza, Hirst, Martin, Marra, Marco A., Condon, Anne, Aparicio, Samuel, Shah, Sohrab P.
Publicado em 2012

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data

Por Roth, Andrew, Ding, Jiarui, Morin, Ryan, Crisan, Anamaria, Ha, Gavin, Giuliany, Ryan, Bashashati, Ali, Hirst, Martin, Turashvili, Gulisa, Oloumi, Arusha, Marra, Marco A., Aparicio, Samuel, Shah, Sohrab P.
Publicado em 2012

Overexpression screens identify conserved dosage chromosome instability genes in yeast and human cancer

Por Duffy, Supipi, Fam, Hok Khim, Wang, Yi Kan, Styles, Erin B., Kim, Jung-Hyun, Ang, J. Sidney, Singh, Tejomayee, Larionov, Vladimir, Shah, Sohrab P., Andrews, Brenda, Boerkoel, Cornelius F., Hieter, Philip
Publicado no Proc Natl Acad Sci U S A (2016)

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

Por Goya, Rodrigo, Sun, Mark G.F., Morin, Ryan D., Leung, Gillian, Ha, Gavin, Wiegand, Kimberley C., Senz, Janine, Crisan, Anamaria, Marra, Marco A., Hirst, Martin, Huntsman, David, Murphy, Kevin P., Aparicio, Sam, Shah, Sohrab P.
Publicado em 2010

Type-Specific Cell Line Models for Type-Specific Ovarian Cancer Research

Por Anglesio, Michael S., Wiegand, Kimberly C., Melnyk, Nataliya, Chow, Christine, Salamanca, Clara, Prentice, Leah M., Senz, Janine, Yang, Winnie, Spillman, Monique A., Cochrane, Dawn R., Shumansky, Karey, Shah, Sohrab P., Kalloger, Steve E., Huntsman, David G.
Publicado em 2013

Correction: Type-Specific Cell Line Models for Type-Specific Ovarian Cancer Research

Por Anglesio, Michael S., Wiegand, Kimberly C., Melnyk, Nataliya, Chow, Christine, Salamanca, Clara, Prentice, Leah M., Senz, Janine, Yang, Winnie, Spillman, Monique A., Cochrane, Dawn R., Shumansky, Karey, Shah, Sohrab P., Kalloger, Steve E., Huntsman, David G.
Publicado em 2013

Correction: Type-Specific Cell Line Models for Type-Specific Ovarian Cancer Research

Por Anglesio, Michael S., Wiegand, Kimberly C., Melnyk, Nataliya, Chow, Christine, Salamanca, Clara, Prentice, Leah M., Senz, Janine, Yang, Winnie, Spillman, Monique A., Cochrane, Dawn R., Shumansky, Karey, Shah, Sohrab P., Kalloger, Steve E., Huntsman, David G.
Publicado em 2013

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types

Por Ding, Jiarui, McConechy, Melissa K., Horlings, Hugo M., Ha, Gavin, Chun Chan, Fong, Funnell, Tyler, Mullaly, Sarah C., Reimand, Jüri, Bashashati, Ali, Bader, Gary D., Huntsman, David, Aparicio, Samuel, Condon, Anne, Shah, Sohrab P.
Publicado no Nat Commun (2015)

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

Por Ha, Gavin, Roth, Andrew, Lai, Daniel, Bashashati, Ali, Ding, Jiarui, Goya, Rodrigo, Giuliany, Ryan, Rosner, Jamie, Oloumi, Arusha, Shumansky, Karey, Chin, Suet-Feung, Turashvili, Gulisa, Hirst, Martin, Caldas, Carlos, Marra, Marco A., Aparicio, Samuel, Shah, Sohrab P.
Publicado em 2012

Robust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substrates

Por Leung, Kaston, Klaus, Anders, Lin, Bill K., Laks, Emma, Biele, Justina, Lai, Daniel, Bashashati, Ali, Huang, Yi-Fei, Aniba, Radhouane, Moksa, Michelle, Steif, Adi, Mes-Masson, Anne-Marie, Hirst, Martin, Shah, Sohrab P., Aparicio, Samuel, Hansen, Carl L.
Publicado no Proc Natl Acad Sci U S A (2016)

Ovarian and endometrial endometrioid carcinomas have distinct CTNNB1 and PTEN mutation profiles

Por McConechy, Melissa K., Ding, Jiarui, Senz, Janine, Yang, Winnie, Melnyk, Nataliya, Tone, Alicia A., Prentice, Leah M., Wiegand, Kimberly, McAlpine, Jessica N., Shah, Sohrab P., Lee, Cheng-Han, Goodfellow, Paul J., Gilks, C. Blake, Huntsman, David G.
Publicado em 2013

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data

Por McPherson, Andrew, Hormozdiari, Fereydoun, Zayed, Abdalnasser, Giuliany, Ryan, Ha, Gavin, Sun, Mark G. F., Griffith, Malachi, Heravi Moussavi, Alireza, Senz, Janine, Melnyk, Nataliya, Pacheco, Marina, Marra, Marco A., Hirst, Martin, Nielsen, Torsten O., Sahinalp, S. Cenk, Huntsman, David, Shah, Sohrab P.
Publicado em 2011