Validation of Skeletal Muscle cis-Regulatory Module Predictions Reveals Nucleotide Composition Bias in Functional Enhancers

Bằng Kwon, Andrew T., Chou, Alice Yi, Arenillas, David J., Wasserman, Wyeth W.
Được phát hành 2011

oPOSSUM-3: Advanced Analysis of Regulatory Motif Over-Representation Across Genes or ChIP-Seq Datasets

Bằng Kwon, Andrew T., Arenillas, David J., Hunt, Rebecca Worsley, Wasserman, Wyeth W.
Được phát hành 2012

oPOSSUM: integrated tools for analysis of regulatory motif over-representation

Bằng Ho Sui, Shannan J., Fulton, Debra L., Arenillas, David J., Kwon, Andrew T., Wasserman, Wyeth W.
Được phát hành 2007

MANTA2, update of the Mongo database for the analysis of transcription factor binding site alterations

Bằng Fornes, Oriol, Gheorghe, Marius, Richmond, Phillip A., Arenillas, David J., Wasserman, Wyeth W., Mathelier, Anthony
Xuất bản năm Sci Data (2018)

CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs

Bằng Arenillas, David J., Forrest, Alistair R. R., Kawaji, Hideya, Lassmann, Timo, Wasserman, Wyeth W., Mathelier, Anthony
Xuất bản năm Bioinformatics (2016)

Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas

Bằng Mathelier, Anthony, Lefebvre, Calvin, Zhang, Allen W, Arenillas, David J, Ding, Jiarui, Wasserman, Wyeth W, Shah, Sohrab P
Xuất bản năm Genome Biol (2015)

oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes

Bằng Ho Sui, Shannan J., Mortimer, James R., Arenillas, David J., Brumm, Jochen, Walsh, Christopher J., Kennedy, Brian P., Wasserman, Wyeth W.
Được phát hành 2005

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

Bằng Mathelier, Anthony, Fornes, Oriol, Arenillas, David J., Chen, Chih-yu, Denay, Grégoire, Lee, Jessica, Shi, Wenqiang, Shyr, Casper, Tan, Ge, Worsley-Hunt, Rebecca, Zhang, Allen W., Parcy, François, Lenhard, Boris, Sandelin, Albin, Wasserman, Wyeth W.
Xuất bản năm Nucleic Acids Res (2016)

YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses

Bằng Chen, Chih-yu, Shi, Wenqiang, Balaton, Bradley P., Matthews, Allison M., Li, Yifeng, Arenillas, David J., Mathelier, Anthony, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R. R., Brown, Carolyn J., Wasserman, Wyeth W.
Xuất bản năm Sci Rep (2016)

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

Bằng Mathelier, Anthony, Zhao, Xiaobei, Zhang, Allen W., Parcy, François, Worsley-Hunt, Rebecca, Arenillas, David J., Buchman, Sorana, Chen, Chih-yu, Chou, Alice, Ienasescu, Hans, Lim, Jonathan, Shyr, Casper, Tan, Ge, Zhou, Michelle, Lenhard, Boris, Sandelin, Albin, Wasserman, Wyeth W.
Được phát hành 2014

PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina

Bằng Hickmott, Jack W, Chen, Chih-yu, Arenillas, David J, Korecki, Andrea J, Lam, Siu Ling, Molday, Laurie L, Bonaguro, Russell J, Zhou, Michelle, Chou, Alice Y, Mathelier, Anthony, Boye, Sanford L, Hauswirth, William W, Molday, Robert S, Wasserman, Wyeth W, Simpson, Elizabeth M
Xuất bản năm Mol Ther Methods Clin Dev (2016)

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

Bằng Khan, Aziz, Fornes, Oriol, Stigliani, Arnaud, Gheorghe, Marius, Castro-Mondragon, Jaime A, van der Lee, Robin, Bessy, Adrien, Chèneby, Jeanne, Kulkarni, Shubhada R, Tan, Ge, Baranasic, Damir, Arenillas, David J, Sandelin, Albin, Vandepoele, Klaas, Lenhard, Boris, Ballester, Benoît, Wasserman, Wyeth W, Parcy, François, Mathelier, Anthony
Xuất bản năm Nucleic Acids Res (2018)

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

Bằng Khan, Aziz, Fornes, Oriol, Stigliani, Arnaud, Gheorghe, Marius, Castro-Mondragon, Jaime A, van der Lee, Robin, Bessy, Adrien, Chèneby, Jeanne, Kulkarni, Shubhada R, Tan, Ge, Baranasic, Damir, Arenillas, David J, Sandelin, Albin, Vandepoele, Klaas, Lenhard, Boris, Ballester, Benoît, Wasserman, Wyeth W, Parcy, François, Mathelier, Anthony
Xuất bản năm Nucleic Acids Res (2018)

A regulatory toolbox of MiniPromoters to drive selective expression in the brain

Bằng Portales-Casamar, Elodie, Swanson, Douglas J., Liu, Li, de Leeuw, Charles N., Banks, Kathleen G., Ho Sui, Shannan J., Fulton, Debra L., Ali, Johar, Amirabbasi, Mahsa, Arenillas, David J., Babyak, Nazar, Black, Sonia F., Bonaguro, Russell J., Brauer, Erich, Candido, Tara R., Castellarin, Mauro, Chen, Jing, Chen, Ying, Cheng, Jason C. Y., Chopra, Vik, Docking, T. Roderick, Dreolini, Lisa, D'Souza, Cletus A., Flynn, Erin K., Glenn, Randy, Hatakka, Kristi, Hearty, Taryn G., Imanian, Behzad, Jiang, Steven, Khorasan-zadeh, Shadi, Komljenovic, Ivana, Laprise, Stéphanie, Liao, Nancy Y., Lim, Jonathan S., Lithwick, Stuart, Liu, Flora, Liu, Jun, Lu, Meifen, McConechy, Melissa, McLeod, Andrea J., Milisavljevic, Marko, Mis, Jacek, O'Connor, Katie, Palma, Betty, Palmquist, Diana L., Schmouth, Jean-François, Swanson, Magdalena I., Tam, Bonny, Ticoll, Amy, Turner, Jenna L., Varhol, Richard, Vermeulen, Jenny, Watkins, Russell F., Wilson, Gary, Wong, Bibiana K. Y., Wong, Siaw H., Wong, Tony Y. T., Yang, George S., Ypsilanti, Athena R., Jones, Steven J. M., Holt, Robert A., Goldowitz, Daniel, Wasserman, Wyeth W., Simpson, Elizabeth M.
Được phát hành 2010