Tumor heterogeneity: next-generation sequencing enhances the view from the pathologist’s microscope

af Aparicio, Samuel, Mardis, Elaine
Udgivet i Genome Biol (2014)

Does massively parallel transcriptome analysis signify the end of cancer histopathology as we know it?

af Aparicio, Samuel AJR, Caldas, Carlos, Ponder, Bruce
Udgivet 2000

Molecular profiling of breast cancer: portraits but not physiognomy

af Brenton, James D, Aparicio, Samuel AJR, Caldas, Carlos
Udgivet 2001

Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion

af Barbosa-Morais, Nuno L., Carmo-Fonseca, Maria, Aparício, Samuel
Udgivet 2006

A new genome-driven integrated classification of breast cancer and its implications

af Dawson, Sarah-Jane, Rueda, Oscar M, Aparicio, Samuel, Caldas, Carlos
Udgivet 2013

ddClone: joint statistical inference of clonal populations from single cell and bulk tumour sequencing data

af Salehi, Sohrab, Steif, Adi, Roth, Andrew, Aparicio, Samuel, Bouchard-Côté, Alexandre, Shah, Sohrab P.
Udgivet i Genome Biol (2017)

Molecular Alterations Between the Primary Breast Cancer and the Subsequent Locoregional/Metastatic Tumor

af Macfarlane, Robyn, Seal, Melanie, Speers, Caroline, Woods, Ryan, Masoudi, Hamad, Aparicio, Samuel, Chia, Stephen K.
Udgivet 2012

Ubiquitin-mediated DNA damage response is synthetic lethal with G-quadruplex stabilizer CX-5461

af Masud, Tehmina, Soong, Charles, Xu, Hong, Biele, Justina, Bjornson, Saelin, McKinney, Steven, Aparicio, Samuel
Udgivet i Sci Rep (2021)

Expression microarray reproducibility is improved by optimising purification steps in RNA amplification and labelling

af Naderi, Ali, Ahmed, Ahmed A, Barbosa-Morais, Nuno L, Aparicio, Samuel, Brenton, James D, Caldas, Carlos
Udgivet 2004

Inter-observer reproducibility of HER2 immunohistochemical assessment and concordance with fluorescent in situ hybridization (FISH): pathologist assessment compared to quantitative...

af Turashvili, Gulisa, Leung, Samuel, Turbin, Dmitry, Montgomery, Kelli, Gilks, Blake, West, Rob, Carrier, Melinda, Huntsman, David, Aparicio, Samuel
Udgivet 2009

Solution NMR Structure and Histone Binding of the PHD Domain of Human MLL5

af Lemak, Alexander, Yee, Adelinda, Wu, Hong, Yap, Damian, Zeng, Hong, Dombrovski, Ludmila, Houliston, Scott, Aparicio, Samuel, Arrowsmith, Cheryl H.
Udgivet 2013

Genome-driven integrated classification of breast cancer validated in over 7,500 samples

af Ali, H Raza, Rueda, Oscar M, Chin, Suet-Feung, Curtis, Christina, Dunning, Mark J, Aparicio, Samuel AJR, Caldas, Carlos
Udgivet 2014

Cooperative signaling between Wnt1 and integrin-linked kinase induces accelerated breast tumor development

af Oloumi, Arusha, Maidan, Mykola, Lock, Frances E, Tearle, Howard, McKinney, Steven, Muller, William J, Aparicio, Samuel AJR, Dedhar, Shoukat
Udgivet 2010

p300 regulates p53-dependent apoptosis after DNA damage in colorectal cancer cells by modulation of PUMA/p21 levels

af Iyer, N. Gopalakrishna, Chin, Suet-Feung, Ozdag, Hilal, Daigo, Yataro, Hu, De-En, Cariati, Massimiliano, Brindle, Kevin, Aparicio, Samuel, Caldas, Carlos
Udgivet 2004

Up-regulation of the interferon-related genes in BRCA2 knockout epithelial cells

af Xu, Hong, Xian, Jian, Vire, Emmanuelle, McKinney, Steven, Wong, Jason, Wei, Vivien, Tong, Rebecca, Kouzarides, Tony, Caldas, Carlos, Aparicio, Samuel
Udgivet i J Pathol (2014)

PyClone: Statistical inference of clonal population structure in cancer

af Roth, Andrew, Khattra, Jaswinder, Yap, Damian, Wan, Adrian, Laks, Emma, Biele, Justina, Ha, Gavin, Aparicio, Samuel, Bouchard-Côté, Alexandre, Shah, Sohrab P.
Udgivet i Nat Methods (2014)

High-throughput microfluidic single-cell RT-qPCR

af White, Adam K., VanInsberghe, Michael, Petriv, Oleh I., Hamidi, Mani, Sikorski, Darek, Marra, Marco A., Piret, James, Aparicio, Samuel, Hansen, Carl L.
Udgivet 2011

DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer

af Bashashati, Ali, Haffari, Gholamreza, Ding, Jiarui, Ha, Gavin, Lui, Kenneth, Rosner, Jamie, Huntsman, David G, Caldas, Carlos, Aparicio, Samuel A, Shah, Sohrab P
Udgivet 2012

The Breast Cancer Oncogene EMSY Represses Transcription of Antimetastatic microRNA miR-31

af Viré, Emmanuelle, Curtis, Christina, Davalos, Veronica, Git, Anna, Robson, Samuel, Villanueva, Alberto, Vidal, August, Barbieri, Isaia, Aparicio, Samuel, Esteller, Manel, Caldas, Carlos, Kouzarides, Tony
Udgivet 2014

The Breast Cancer Oncogene EMSY Represses Transcription of Antimetastatic microRNA miR-31

af Viré, Emmanuelle, Curtis, Christina, Davalos, Veronica, Git, Anna, Robson, Samuel, Villanueva, Alberto, Vidal, August, Barbieri, Isaia, Aparicio, Samuel, Esteller, Manel, Caldas, Carlos, Kouzarides, Tony
Udgivet i Mol Cell (2014)