Internet Contig Explorer (iCE)—A Tool for Visualizing Clone Fingerprint Maps

by Fjell, Christopher D., Bosdet, Ian, Schein, Jacqueline E., Jones, Steven J.M., Marra, Marco A.
Published 2003

ABySS: A parallel assembler for short read sequence data

by Simpson, Jared T., Wong, Kim, Jackman, Shaun D., Schein, Jacqueline E., Jones, Steven J.M., Birol, İnanç
Published 2009

Novel expressed sequences identified in a model of androgen independent prostate cancer

by Quayle, Steven N, Hare, Heidi, Delaney, Allen D, Hirst, Martin, Hwang, Dorothy, Schein, Jacqueline E, Jones, Steven JM, Marra, Marco A, Sadar, Marianne D
Published 2007

Putative BRAF activating fusion in a medullary thyroid cancer

by Kasaian, Katayoon, Wiseman, Sam M., Walker, Blair A., Schein, Jacqueline E., Hirst, Martin, Moore, Richard A., Mungall, Andrew J., Marra, Marco A., Jones, Steven J.M.
Published in Cold Spring Harb Mol Case Stud (2016)

The genomic and transcriptomic landscape of anaplastic thyroid cancer: implications for therapy

by Kasaian, Katayoon, Wiseman, Sam M., Walker, Blair A., Schein, Jacqueline E., Zhao, Yongjun, Hirst, Martin, Moore, Richard A., Mungall, Andrew J., Marra, Marco A., Jones, Steven JM
Published in BMC Cancer (2015)

A high-resolution whole-genome cattle–human comparative map reveals details of mammalian chromosome evolution

by Wind, Annelie Everts-van der, Larkin, Denis M., Green, Cheryl A., Elliott, Janice S., Olmstead, Colleen A., Chiu, Readman, Schein, Jacqueline E., Marra, Marco A., Womack, James E., Lewin, Harris A.
Published 2005

Physical Maps for Genome Analysis of Serotype A and D Strains of the Fungal Pathogen Cryptococcus neoformans

by Schein, Jacqueline E., Tangen, Kristin L., Chiu, Readman, Shin, Heesun, Lengeler, Klaus B., MacDonald, William Kim, Bosdet, Ian, Heitman, Joseph, Jones, Steven J.M., Marra, Marco A., Kronstad, James W.
Published 2002

A BAC-based physical map of the Drosophila buzzatii genome

by González, Josefa, Nefedov, Michael, Bosdet, Ian, Casals, Ferran, Calvete, Oriol, Delprat, Alejandra, Shin, Heesun, Chiu, Readman, Mathewson, Carrie, Wye, Natasja, Hoskins, Roger A., Schein, Jacqueline E., de Jong, Pieter, Ruiz, Alfredo
Published 2005

Software for Automated Analysis of DNA Fingerprinting Gels

by Fuhrmann, Daniel R., Krzywinski, Martin I., Chiu, Readman, Saeedi, Parvaneh, Schein, Jacqueline E., Bosdet, Ian E., Chinwalla, Asif, Hillier, LaDeana W., Waterston, Robert H., McPherson, John D., Jones, Steven J.M., Marra, Marco A.
Published 2003

Molecular etiology of an indolent lymphoproliferative disorder determined by whole-genome sequencing

by Parker, Jeremy D.K., Shen, Yaoqing, Pleasance, Erin, Li, Yvonne, Schein, Jacqueline E., Zhao, Yongjun, Moore, Richard, Wegrzyn-Woltosz, Joanna, Savage, Kerry J., Weng, Andrew P., Gascoyne, Randy D., Jones, Steven, Marra, Marco, Laskin, Janessa, Karsan, Aly
Published in Cold Spring Harb Mol Case Stud (2016)

Physical map-assisted whole-genome shotgun sequence assemblies

by Warren, René L., Varabei, Dmitry, Platt, Darren, Huang, Xiaoqiu, Messina, David, Yang, Shiaw-Pyng, Kronstad, James W., Krzywinski, Martin, Warren, Wesley C., Wallis, John W., Hillier, LaDeana W., Chinwalla, Asif T., Schein, Jacqueline E., Siddiqui, Asim S., Marra, Marco A., Wilson, Richard K., Jones, Steven J.M.
Published 2006

MEN1 Mutations in Hürthle Cell (Oncocytic) Thyroid Carcinoma

by Kasaian, Katayoon, Chindris, Ana-Maria, Wiseman, Sam M., Mungall, Karen L., Zeng, Thomas, Tse, Kane, Schein, Jacqueline E., Rivera, Michael, Necela, Brian M., Kachergus, Jennifer M., Casler, John D., Mungall, Andrew J., Moore, Richard A., Marra, Marco A., Copland, John A., Thompson, E. Aubrey, Smallridge, Robert C., Jones, Steven J. M.
Published in J Clin Endocrinol Metab (2015)

Diagnostic Value of Next-Generation Sequencing in an Unusual Sphenoid Tumor

by Jamshidi, Farzad, Pleasance, Erin, Li, Yvonne, Shen, Yaoqing, Kasaian, Katayoon, Corbett, Richard, Eirew, Peter, Lum, Amy, Pandoh, Pawan, Zhao, Yongjun, Schein, Jacqueline E., Moore, Richard A., Rassekh, Rod, Huntsman, David G., Knowling, Meg, Lim, Howard, Renouf, Daniel J., Jones, Steven J.M., Marra, Marco A., Nielsen, Torsten O., Laskin, Janessa, Yip, Stephen
Published 2014

An efficient strategy for large-scale high-throughput transposon-mediated sequencing of cDNA clones

by Butterfield, Yaron S. N., Marra, Marco A., Asano, Jennifer K., Chan, Susanna Y., Guin, Ranabir, Krzywinski, Martin I., Lee, Soo Sen, MacDonald, Kim W. K., Mathewson, Carrie A., Olson, Teika E., Pandoh, Pawan K., Prabhu, Anna-Liisa, Schnerch, Angelique, Skalska, Ursula, Smailus, Duane E., Stott, Jeff M., Tsai, Miranda I., Yang, George S., Zuyderduyn, Scott D., Schein, Jacqueline E., Jones, Steven J. M.
Published 2002

Development and Application of a Salmonid EST Database and cDNA Microarray: Data Mining and Interspecific Hybridization Characteristics

by Rise, Matthew L., von Schalburg, Kristian R., Brown, Gordon D., Mawer, Melanie A., Devlin, Robert H., Kuipers, Nathanael, Busby, Maura, Beetz-Sargent, Marianne, Alberto, Roberto, Gibbs, A. Ross, Hunt, Peter, Shukin, Robert, Zeznik, Jeffrey A., Nelson, Colleen, Jones, Simon R.M., Smailus, Duane E., Jones, Steven J.M., Schein, Jacqueline E., Marra, Marco A., Butterfield, Yaron S.N., Stott, Jeff M., Ng, Siemon H.S., Davidson, William S., Koop, Ben F.
Published 2004

The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse

by McLeod, Michael P., Warren, René L., Hsiao, William W. L., Araki, Naoto, Myhre, Matthew, Fernandes, Clinton, Miyazawa, Daisuke, Wong, Wendy, Lillquist, Anita L., Wang, Dennis, Dosanjh, Manisha, Hara, Hirofumi, Petrescu, Anca, Morin, Ryan D., Yang, George, Stott, Jeff M., Schein, Jacqueline E., Shin, Heesun, Smailus, Duane, Siddiqui, Asim S., Marra, Marco A., Jones, Steven J. M., Holt, Robert, Brinkman, Fiona S. L., Miyauchi, Keisuke, Fukuda, Masao, Davies, Julian E., Mohn, William W., Eltis, Lindsay D.
Published 2006

The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics

by Stein, Lincoln D, Bao, Zhirong, Blasiar, Darin, Blumenthal, Thomas, Brent, Michael R, Chen, Nansheng, Chinwalla, Asif, Clarke, Laura, Clee, Chris, Coghlan, Avril, Coulson, Alan, D'Eustachio, Peter, Fitch, David H. A, Fulton, Lucinda A, Fulton, Robert E, Griffiths-Jones, Sam, Harris, Todd W, Hillier, LaDeana W, Kamath, Ravi, Kuwabara, Patricia E, Mardis, Elaine R, Marra, Marco A, Miner, Tracie L, Minx, Patrick, Mullikin, James C, Plumb, Robert W, Rogers, Jane, Schein, Jacqueline E, Sohrmann, Marc, Spieth, John, Stajich, Jason E, Wei, Chaochun, Willey, David, Wilson, Richard K, Durbin, Richard, Waterston, Robert H
Published 2003

Oligonucleotide Microarray Analysis of Genomic Imbalance in Children with Mental Retardation

by Friedman, J. M., Baross, Ágnes, Delaney, Allen D., Ally, Adrian, Arbour, Laura, Asano, Jennifer, Bailey, Dione K., Barber, Sarah, Birch, Patricia, Brown-John, Mabel, Cao, Manqiu, Chan, Susanna, Charest, David L., Farnoud, Noushin, Fernandes, Nicole, Flibotte, Stephane, Go, Anne, Gibson, William T., Holt, Robert A., Jones, Steven J. M., Kennedy, Giulia C., Krzywinski, Martin, Langlois, Sylvie, Li, Haiyan I., McGillivray, Barbara C., Nayar, Tarun, Pugh, Trevor J., Rajcan-Separovic, Evica, Schein, Jacqueline E., Schnerch, Angelique, Siddiqui, Asim, Van Allen, Margot I., Wilson, Gary, Yong, Siu-Li, Zahir, Farah, Eydoux, Patrice, Marra, Marco A.
Published 2006

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

by Duplessis, Sébastien, Cuomo, Christina A., Lin, Yao-Cheng, Aerts, Andrea, Tisserant, Emilie, Veneault-Fourrey, Claire, Joly, David L., Hacquard, Stéphane, Amselem, Joëlle, Cantarel, Brandi L., Chiu, Readman, Coutinho, Pedro M., Feau, Nicolas, Field, Matthew, Frey, Pascal, Gelhaye, Eric, Goldberg, Jonathan, Grabherr, Manfred G., Kodira, Chinnappa D., Kohler, Annegret, Kües, Ursula, Lindquist, Erika A., Lucas, Susan M., Mago, Rohit, Mauceli, Evan, Morin, Emmanuelle, Murat, Claude, Pangilinan, Jasmyn L., Park, Robert, Pearson, Matthew, Quesneville, Hadi, Rouhier, Nicolas, Sakthikumar, Sharadha, Salamov, Asaf A., Schmutz, Jeremy, Selles, Benjamin, Shapiro, Harris, Tanguay, Philippe, Tuskan, Gerald A., Henrissat, Bernard, Van de Peer, Yves, Rouzé, Pierre, Ellis, Jeffrey G., Dodds, Peter N., Schein, Jacqueline E., Zhong, Shaobin, Hamelin, Richard C., Grigoriev, Igor V., Szabo, Les J., Martin, Francis
Published 2011

Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation

by Janbon, Guilhem, Ormerod, Kate L., Paulet, Damien, Byrnes, Edmond J., Yadav, Vikas, Chatterjee, Gautam, Mullapudi, Nandita, Hon, Chung-Chau, Billmyre, R. Blake, Brunel, François, Bahn, Yong-Sun, Chen, Weidong, Chen, Yuan, Chow, Eve W. L., Coppée, Jean-Yves, Floyd-Averette, Anna, Gaillardin, Claude, Gerik, Kimberly J., Goldberg, Jonathan, Gonzalez-Hilarion, Sara, Gujja, Sharvari, Hamlin, Joyce L., Hsueh, Yen-Ping, Ianiri, Giuseppe, Jones, Steven, Kodira, Chinnappa D., Kozubowski, Lukasz, Lam, Woei, Marra, Marco, Mesner, Larry D., Mieczkowski, Piotr A., Moyrand, Frédérique, Nielsen, Kirsten, Proux, Caroline, Rossignol, Tristan, Schein, Jacqueline E., Sun, Sheng, Wollschlaeger, Carolin, Wood, Ian A., Zeng, Qiandong, Neuvéglise, Cécile, Newlon, Carol S., Perfect, John R., Lodge, Jennifer K., Idnurm, Alexander, Stajich, Jason E., Kronstad, James W., Sanyal, Kaustuv, Heitman, Joseph, Fraser, James A., Cuomo, Christina A., Dietrich, Fred S.
Published 2014