Assembling genomes using short-read sequencing technology

Autor Jackman, Shaun D, Birol, İnanç
Vydáno 2010

HLA predictions from the bronchoalveolar lavage fluid samples of five patients at the early stage of the wuhan seafood market COVID-19 outbreak

Autor Warren, René L., Birol, Inanç
Vydáno v ArXiv (2020)

HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset

Autor Warren, René L, Birol, Inanç
Vydáno v Bioinformatics (2020)

Retrospective in silico HLA predictions from COVID-19 patients reveal alleles associated with disease prognosis

Autor Warren, René L., Birol, Inanç
Vydáno v medRxiv (2020)

Interactive SARS-COV-2 mutation timemaps

Autor Warren, René L., Birol, Inanç
Vydáno v ArXiv (2020)

Interactive SARS-CoV-2 mutation timemaps

Autor Warren, René L., Birol, Inanc
Vydáno v F1000Res (2021)

Metabolic Control Analysis under Uncertainty: Framework Development and Case Studies

Autor Wang, Liqing, Birol, İnanç, Hatzimanikatis, Vassily
Vydáno 2004

ntCard: a streaming algorithm for cardinality estimation in genomics data

Autor Mohamadi, Hamid, Khan, Hamza, Birol, Inanc
Vydáno v Bioinformatics (2017)

UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation

Autor Jackman, Shaun D., Bohlmann, Joerg, Birol, İnanç
Vydáno v PLoS One (2015)

Fusion-Bloom: fusion detection in assembled transcriptomes

Autor Chiu, Readman, Nip, Ka Ming, Birol, Inanc
Vydáno v Bioinformatics (2020)

Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies

Autor Hajirasouliha, Iman, Hormozdiari, Fereydoun, Sahinalp, S. Cenk, Birol, Inanc
Vydáno 2008

ntHash: recursive nucleotide hashing

Autor Mohamadi, Hamid, Chu, Justin, Vandervalk, Benjamin P., Birol, Inanc
Vydáno v Bioinformatics (2016)

NanoSim: nanopore sequence read simulator based on statistical characterization

Autor Yang, Chen, Chu, Justin, Warren, René L, Birol, Inanç
Vydáno v Gigascience (2017)

TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data

Autor Chiu, Readman, Nip, Ka Ming, Chu, Justin, Birol, Inanc
Vydáno v BMC Med Genomics (2018)

Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline

Autor Hadj Khodabakhshi, Alireza, Fejes, Anthony P, Birol, Inanc, Jones, Steven JM
Vydáno 2013

Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art

Autor Chu, Justin, Mohamadi, Hamid, Warren, René L, Yang, Chen, Birol, Inanç
Vydáno v Bioinformatics (2017)

ARCS: scaffolding genome drafts with linked reads

Autor Yeo, Sarah, Coombe, Lauren, Warren, René L, Chu, Justin, Birol, Inanç
Vydáno v Bioinformatics (2018)

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs

Autor Coombe, Lauren, Nikolić, Vladimir, Chu, Justin, Birol, Inanc, Warren, René L
Vydáno v Bioinformatics (2020)

Dissect: detection and characterization of novel structural alterations in transcribed sequences

Autor Yorukoglu, Deniz, Hach, Faraz, Swanson, Lucas, Collins, Colin C., Birol, Inanc, Sahinalp, S. Cenk
Vydáno 2012

De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes

Autor Birol, Inanc, Behsaz, Bahar, Hammond, S. Austin, Kucuk, Erdi, Veldhoen, Nik, Helbing, Caren C.
Vydáno v PLoS One (2015)