Past roadblocks and new opportunities in transcription factor network mapping

অনুযায়ী Brent, Michael R.
প্রকাশিত Trends Genet (2016)

Eval: A software package for analysis of genome annotations

অনুযায়ী Keibler, Evan, Brent, Michael R
প্রকাশিত 2003

Using ESTs to improve the accuracy of de novo gene prediction

অনুযায়ী Wei, Chaochun, Brent, Michael R
প্রকাশিত 2006

Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts

অনুযায়ী Flicek, Paul, Brent, Michael R
প্রকাশিত 2006

Benchmarking regulatory network reconstruction with GRENDEL

অনুযায়ী Haynes, Brian C., Brent, Michael R.
প্রকাশিত 2009

Inferring TF activities and activity regulators from gene expression data with constraints from TF perturbation data

অনুযায়ী Ma, Cynthia Z, Brent, Michael R
প্রকাশিত Bioinformatics (2020)

Iterative gene prediction and pseudogene removal improves genome annotation

অনুযায়ী van Baren, Marijke J., Brent, Michael R.
প্রকাশিত 2006

Begin at the beginning: Predicting genes with 5′ UTRs

অনুযায়ী Brown, Randall H., Gross, Samuel S., Brent, Michael R.
প্রকাশিত 2005

Pairagon+N-SCAN_EST: a model-based gene annotation pipeline

অনুযায়ী Arumugam, Manimozhiyan, Wei, Chaochun, Brown, Randall H, Brent, Michael R
প্রকাশিত 2006

Leveraging the Mouse Genome for Gene Prediction in Human: From Whole-Genome Shotgun Reads to a Global Synteny Map

অনুযায়ী Flicek, Paul, Keibler, Evan, Hu, Ping, Korf, Ian, Brent, Michael R.
প্রকাশিত 2003

Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner

অনুযায়ী Lu, David V., Brown, Randall H., Arumugam, Manimozhiyan, Brent, Michael R.
প্রকাশিত 2009

NetProphet 2.0: mapping transcription factor networks by exploiting scalable data resources

অনুযায়ী Kang, Yiming, Liow, Hien-Haw, Maier, Ezekiel J, Brent, Michael R
প্রকাশিত Bioinformatics (2018)

A quantitative model of glucose signaling in yeast reveals an incoherent feed forward loop leading to a specific, transient pulse of transcription

অনুযায়ী Kuttykrishnan, Sooraj, Sabina, Jeffrey, Langton, Laura L., Johnston, Mark, Brent, Michael R.
প্রকাশিত 2010

Reduced DICER1 elicits an interferon response in endometrial cancer cells

অনুযায়ী Chiappinelli, Katherine B., Haynes, Brian C., Brent, Michael R., Goodfellow, Paul J.
প্রকাশিত 2012

Identification of Rat Genes by TWINSCAN Gene Prediction, RT–PCR, and Direct Sequencing

অনুযায়ী Wu, Jia Qian, Shteynberg, David, Arumugam, Manimozhiyan, Gibbs, Richard A., Brent, Michael R.
প্রকাশিত 2004

Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions

অনুযায়ী Wei, Chaochun, Lamesch, Philippe, Arumugam, Manimozhiyan, Rosenberg, Jennifer, Hu, Ping, Vidal, Marc, Brent, Michael R.
প্রকাশিত 2005

A tale of two templates: Automatically resolving double traces has many applications, including efficient PCR-based elucidation of alternative splices

অনুযায়ী Tenney, Aaron E., Wu, Jia Qian, Langton, Laura, Klueh, Paul, Quatrano, Ralph, Brent, Michael R.
প্রকাশিত 2007

Gene prediction and verification in a compact genome with numerous small introns

অনুযায়ী Tenney, Aaron E., Brown, Randall H., Vaske, Charles, Lodge, Jennifer K., Doering, Tamara L., Brent, Michael R.
প্রকাশিত 2004

Mapping functional transcription factor networks from gene expression data

অনুযায়ী Haynes, Brian C., Maier, Ezekiel J., Kramer, Michael H., Wang, Patricia I., Brown, Holly, Brent, Michael R.
প্রকাশিত 2013

Unintended Side Effects of Transformation Are Very Rare in Cryptococcus neoformans

অনুযায়ী Friedman, Ryan Z., Gish, Stacey R., Brown, Holly, Brier, Lindsey, Howard, Nicole, Doering, Tamara L., Brent, Michael R.
প্রকাশিত G3 (Bethesda) (2018)