A Bayesian Network Driven Approach to Model the Transcriptional Response to Nitric Oxide in Saccharomyces cerevisiae

av Zhu, Jingchun, Jambhekar, Ashwini, Sarver, Aaron, DeRisi, Joseph
Publicerad 2006

Exploring TCGA Pan-Cancer Data at the UCSC Cancer Genomics Browser

av Cline, Melissa S., Craft, Brian, Swatloski, Teresa, Goldman, Mary, Ma, Singer, Haussler, David, Zhu, Jingchun
Publicerad 2013

Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage

av Zhu, Jingchun, Sanborn, J. Zachary, Diekhans, Mark, Lowe, Craig B, Pringle, Tom H, Haussler, David
Publicerad 2007

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

av Bozdech, Zbynek, Zhu, Jingchun, Joachimiak, Marcin P, Cohen, Fred E, Pulliam, Brian, DeRisi, Joseph L
Publicerad 2003

The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium falciparum

av Bozdech, Zbynek, Llinás, Manuel, Pulliam, Brian Lee, Wong, Edith D, Zhu, Jingchun, DeRisi, Joseph L
Publicerad 2003

The UCSC Cancer Genomics Browser: update 2015

av Goldman, Mary, Craft, Brian, Swatloski, Teresa, Cline, Melissa, Morozova, Olena, Diekhans, Mark, Haussler, David, Zhu, Jingchun
I publikationen Nucleic Acids Res (2014)

RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection

av Radenbaugh, Amie J., Ma, Singer, Ewing, Adam, Stuart, Joshua M., Collisson, Eric A., Zhu, Jingchun, Haussler, David
I publikationen PLoS One (2014)

Human tRNA genes function as chromatin insulators

av Raab, Jesse R, Chiu, Jonathan, Zhu, Jingchun, Katzman, Sol, Kurukuti, Sreenivasulu, Wade, Paul A, Haussler, David, Kamakaka, Rohinton T
Publicerad 2012

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

av Vaske, Charles J., Benz, Stephen C., Sanborn, J. Zachary, Earl, Dent, Szeto, Christopher, Zhu, Jingchun, Haussler, David, Stuart, Joshua M.
Publicerad 2010

The UCSC Cancer Genomics Browser: update 2013

av Goldman, Mary, Craft, Brian, Swatloski, Teresa, Ellrott, Kyle, Cline, Melissa, Diekhans, Mark, Ma, Singer, Wilks, Chris, Stuart, Josh, Haussler, David, Zhu, Jingchun
Publicerad 2013

Visualizing and interpreting cancer genomics data via the Xena platform

av Goldman, Mary J., Craft, Brian, Hastie, Mim, Repečka, Kristupas, McDade, Fran, Kamath, Akhil, Banerjee, Ayan, Luo, Yunhai, Rogers, Dave, Brooks, Angela N., Zhu, Jingchun, Haussler, David
I publikationen Nat Biotechnol (2020)

The UCSC Cancer Genomics Browser

av Zhu, Jingchun, Sanborn, J Zachary, Benz, Stephen, Szeto, Christopher, Hsu, Fan, Kuhn, Robert M, Karolchik, Donna, Archie, John, Lenburg, Marc E, Esserman, Laura J, Kent, W James, Haussler, David, Wang, Ting
I publikationen Nat Methods (2009)

Realizing the Promise of Reverse Phase Protein Arrays for Clinical, Translational, and Basic Research: A Workshop Report: The RPPA (Reverse Phase Protein Array) Society

av Akbani, Rehan, Becker, Karl-Friedrich, Carragher, Neil, Goldstein, Ted, de Koning, Leanne, Korf, Ulrike, Liotta, Lance, Mills, Gordon B., Nishizuka, Satoshi S., Pawlak, Michael, Petricoin, Emanuel F., Pollard, Harvey B., Serrels, Bryan, Zhu, Jingchun
Publicerad 2014

A DNA hypermethylation module for the stem/progenitor cell signature of cancer

av Easwaran, Hariharan, Johnstone, Sarah E., Van Neste, Leander, Ohm, Joyce, Mosbruger, Tim, Wang, Qiuju, Aryee, Martin J., Joyce, Patrick, Ahuja, Nita, Weisenberger, Dan, Collisson, Eric, Zhu, Jingchun, Yegnasubramanian, Srinivasan, Matsui, William, Baylin, Stephen B.
Publicerad 2012

The UCSC cancer genomics browser: update 2011

av Sanborn, J. Zachary, Benz, Stephen C., Craft, Brian, Szeto, Christopher, Kober, Kord M., Meyer, Laurence, Vaske, Charles J., Goldman, Mary, Smith, Kayla E., Kuhn, Robert M., Karolchik, Donna, Kent, W. James, Stuart, Joshua M., Haussler, David, Zhu, Jingchun
Publicerad 2011

The Human Epigenome Browser at Washington University

av Zhou, Xin, Maricque, Brett, Xie, Mingchao, Li, Daofeng, Sundaram, Vasavi, Martin, Eric A., Koebbe, Brian C., Nielsen, Cydney, Hirst, Martin, Farnham, Peggy, Kuhn, Robert, Zhu, Jingchun, Smirnov, Ivan, Kent, W. James, Haussler, David, Madden, Pamela A.F., Costello, Joseph F., Wang, Ting
Publicerad 2011

A user guide for the online exploration and visualization of PCAWG data

av Goldman, Mary J., Zhang, Junjun, Fonseca, Nuno A., Cortés-Ciriano, Isidro, Xiang, Qian, Craft, Brian, Piñeiro-Yáñez, Elena, O’Connor, Brian D., Bazant, Wojciech, Barrera, Elisabet, Muñoz-Pomer, Alfonso, Petryszak, Robert, Füllgrabe, Anja, Al-Shahrour, Fatima, Keays, Maria, Haussler, David, Weinstein, John N., Huber, Wolfgang, Valencia, Alfonso, Park, Peter J., Papatheodorou, Irene, Zhu, Jingchun, Ferretti, Vincent, Vazquez, Miguel
I publikationen Nat Commun (2020)

Toil enables reproducible, open source, big biomedical data analyses

av Vivian, John, Rao, Arjun Arkal, Nothaft, Frank Austin, Ketchum, Christopher, Armstrong, Joel, Novak, Adam, Pfeil, Jacob, Narkizian, Jake, Deran, Alden D, Musselman-Brown, Audrey, Schmidt, Hannes, Amstutz, Peter, Craft, Brian, Goldman, Mary, Rosenbloom, Kate, Cline, Melissa, O’Connor, Brian, Hanna, Megan, Birger, Chet, Kent, W James, Patterson, David A, Joseph, Anthony D, Zhu, Jingchun, Zaranek, Sasha, Getz, Gad, Haussler, David, Paten, Benedict
I publikationen Nat Biotechnol (2017)

Comparative RNA-Sequencing Analysis Benefits a Pediatric Patient With Relapsed Cancer

av Newton, Yulia, Rassekh, S. Rod, Deyell, Rebecca J., Shen, Yaoqing, Jones, Martin R., Dunham, Chris, Yip, Stephen, Leelakumari, Sreeja, Zhu, Jingchun, McColl, Duncan, Swatloski, Teresa, Salama, Sofie R., Ng, Tony, Hendson, Glenda, Lee, Anna F., Ma, Yussanne, Moore, Richard, Mungall, Andrew J., Haussler, David, Stuart, Joshua M., Jantzen, Colleen, Laskin, Janessa, Jones, Steven J.M., Marra, Marco A., Morozova, Olena
I publikationen JCO Precis Oncol (2018)

A Distributed Network for Intensive Longitudinal Monitoring in Metastatic Triple-Negative Breast Cancer

av Blau, C. Anthony, Ramirez, Arturo B., Blau, Sibel, Pritchard, Colin C., Dorschner, Michael O., Schmechel, Stephen C., Martins, Timothy J., Mahen, Elisabeth M., Burton, Kimberly A., Komashko, Vitalina M., Radenbaugh, Amie J., Dougherty, Katy, Thomas, Anju, Miller, Christopher P., Annis, James, Fromm, Jonathan R., Song, Chaozhong, Chang, Elizabeth, Howard, Kellie, Austin, Sharon, Schmidt, Rodney A., Linenberger, Michael L., Becker, Pamela S., Senecal, Francis M., Mecham, Brigham H., Lee, Su-In, Madan, Anup, Ronen, Roy, Dutkowski, Janusz, Heimfeld, Shelly, Wood, Brent L., Stilwell, Jackie L., Kaldjian, Eric P., Haussler, David, Zhu, Jingchun
I publikationen J Natl Compr Canc Netw (2016)