A Bayesian Network Driven Approach to Model the Transcriptional Response to Nitric Oxide in Saccharomyces cerevisiae

بواسطة Zhu, Jingchun, Jambhekar, Ashwini, Sarver, Aaron, DeRisi, Joseph
منشور في 2006

Exploring TCGA Pan-Cancer Data at the UCSC Cancer Genomics Browser

بواسطة Cline, Melissa S., Craft, Brian, Swatloski, Teresa, Goldman, Mary, Ma, Singer, Haussler, David, Zhu, Jingchun
منشور في 2013

Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage

بواسطة Zhu, Jingchun, Sanborn, J. Zachary, Diekhans, Mark, Lowe, Craig B, Pringle, Tom H, Haussler, David
منشور في 2007

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

بواسطة Bozdech, Zbynek, Zhu, Jingchun, Joachimiak, Marcin P, Cohen, Fred E, Pulliam, Brian, DeRisi, Joseph L
منشور في 2003

The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium falciparum

بواسطة Bozdech, Zbynek, Llinás, Manuel, Pulliam, Brian Lee, Wong, Edith D, Zhu, Jingchun, DeRisi, Joseph L
منشور في 2003

The UCSC Cancer Genomics Browser: update 2015

بواسطة Goldman, Mary, Craft, Brian, Swatloski, Teresa, Cline, Melissa, Morozova, Olena, Diekhans, Mark, Haussler, David, Zhu, Jingchun
الحاوية / القاعدة Nucleic Acids Res (2014)

RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection

بواسطة Radenbaugh, Amie J., Ma, Singer, Ewing, Adam, Stuart, Joshua M., Collisson, Eric A., Zhu, Jingchun, Haussler, David
الحاوية / القاعدة PLoS One (2014)

Human tRNA genes function as chromatin insulators

بواسطة Raab, Jesse R, Chiu, Jonathan, Zhu, Jingchun, Katzman, Sol, Kurukuti, Sreenivasulu, Wade, Paul A, Haussler, David, Kamakaka, Rohinton T
منشور في 2012

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

بواسطة Vaske, Charles J., Benz, Stephen C., Sanborn, J. Zachary, Earl, Dent, Szeto, Christopher, Zhu, Jingchun, Haussler, David, Stuart, Joshua M.
منشور في 2010

The UCSC Cancer Genomics Browser: update 2013

بواسطة Goldman, Mary, Craft, Brian, Swatloski, Teresa, Ellrott, Kyle, Cline, Melissa, Diekhans, Mark, Ma, Singer, Wilks, Chris, Stuart, Josh, Haussler, David, Zhu, Jingchun
منشور في 2013

Visualizing and interpreting cancer genomics data via the Xena platform

بواسطة Goldman, Mary J., Craft, Brian, Hastie, Mim, Repečka, Kristupas, McDade, Fran, Kamath, Akhil, Banerjee, Ayan, Luo, Yunhai, Rogers, Dave, Brooks, Angela N., Zhu, Jingchun, Haussler, David
الحاوية / القاعدة Nat Biotechnol (2020)

The UCSC Cancer Genomics Browser

بواسطة Zhu, Jingchun, Sanborn, J Zachary, Benz, Stephen, Szeto, Christopher, Hsu, Fan, Kuhn, Robert M, Karolchik, Donna, Archie, John, Lenburg, Marc E, Esserman, Laura J, Kent, W James, Haussler, David, Wang, Ting
الحاوية / القاعدة Nat Methods (2009)

Realizing the Promise of Reverse Phase Protein Arrays for Clinical, Translational, and Basic Research: A Workshop Report: The RPPA (Reverse Phase Protein Array) Society

بواسطة Akbani, Rehan, Becker, Karl-Friedrich, Carragher, Neil, Goldstein, Ted, de Koning, Leanne, Korf, Ulrike, Liotta, Lance, Mills, Gordon B., Nishizuka, Satoshi S., Pawlak, Michael, Petricoin, Emanuel F., Pollard, Harvey B., Serrels, Bryan, Zhu, Jingchun
منشور في 2014

A DNA hypermethylation module for the stem/progenitor cell signature of cancer

بواسطة Easwaran, Hariharan, Johnstone, Sarah E., Van Neste, Leander, Ohm, Joyce, Mosbruger, Tim, Wang, Qiuju, Aryee, Martin J., Joyce, Patrick, Ahuja, Nita, Weisenberger, Dan, Collisson, Eric, Zhu, Jingchun, Yegnasubramanian, Srinivasan, Matsui, William, Baylin, Stephen B.
منشور في 2012

The UCSC cancer genomics browser: update 2011

بواسطة Sanborn, J. Zachary, Benz, Stephen C., Craft, Brian, Szeto, Christopher, Kober, Kord M., Meyer, Laurence, Vaske, Charles J., Goldman, Mary, Smith, Kayla E., Kuhn, Robert M., Karolchik, Donna, Kent, W. James, Stuart, Joshua M., Haussler, David, Zhu, Jingchun
منشور في 2011

The Human Epigenome Browser at Washington University

بواسطة Zhou, Xin, Maricque, Brett, Xie, Mingchao, Li, Daofeng, Sundaram, Vasavi, Martin, Eric A., Koebbe, Brian C., Nielsen, Cydney, Hirst, Martin, Farnham, Peggy, Kuhn, Robert, Zhu, Jingchun, Smirnov, Ivan, Kent, W. James, Haussler, David, Madden, Pamela A.F., Costello, Joseph F., Wang, Ting
منشور في 2011

A user guide for the online exploration and visualization of PCAWG data

بواسطة Goldman, Mary J., Zhang, Junjun, Fonseca, Nuno A., Cortés-Ciriano, Isidro, Xiang, Qian, Craft, Brian, Piñeiro-Yáñez, Elena, O’Connor, Brian D., Bazant, Wojciech, Barrera, Elisabet, Muñoz-Pomer, Alfonso, Petryszak, Robert, Füllgrabe, Anja, Al-Shahrour, Fatima, Keays, Maria, Haussler, David, Weinstein, John N., Huber, Wolfgang, Valencia, Alfonso, Park, Peter J., Papatheodorou, Irene, Zhu, Jingchun, Ferretti, Vincent, Vazquez, Miguel
الحاوية / القاعدة Nat Commun (2020)

Toil enables reproducible, open source, big biomedical data analyses

بواسطة Vivian, John, Rao, Arjun Arkal, Nothaft, Frank Austin, Ketchum, Christopher, Armstrong, Joel, Novak, Adam, Pfeil, Jacob, Narkizian, Jake, Deran, Alden D, Musselman-Brown, Audrey, Schmidt, Hannes, Amstutz, Peter, Craft, Brian, Goldman, Mary, Rosenbloom, Kate, Cline, Melissa, O’Connor, Brian, Hanna, Megan, Birger, Chet, Kent, W James, Patterson, David A, Joseph, Anthony D, Zhu, Jingchun, Zaranek, Sasha, Getz, Gad, Haussler, David, Paten, Benedict
الحاوية / القاعدة Nat Biotechnol (2017)

Comparative RNA-Sequencing Analysis Benefits a Pediatric Patient With Relapsed Cancer

بواسطة Newton, Yulia, Rassekh, S. Rod, Deyell, Rebecca J., Shen, Yaoqing, Jones, Martin R., Dunham, Chris, Yip, Stephen, Leelakumari, Sreeja, Zhu, Jingchun, McColl, Duncan, Swatloski, Teresa, Salama, Sofie R., Ng, Tony, Hendson, Glenda, Lee, Anna F., Ma, Yussanne, Moore, Richard, Mungall, Andrew J., Haussler, David, Stuart, Joshua M., Jantzen, Colleen, Laskin, Janessa, Jones, Steven J.M., Marra, Marco A., Morozova, Olena
الحاوية / القاعدة JCO Precis Oncol (2018)

A Distributed Network for Intensive Longitudinal Monitoring in Metastatic Triple-Negative Breast Cancer

بواسطة Blau, C. Anthony, Ramirez, Arturo B., Blau, Sibel, Pritchard, Colin C., Dorschner, Michael O., Schmechel, Stephen C., Martins, Timothy J., Mahen, Elisabeth M., Burton, Kimberly A., Komashko, Vitalina M., Radenbaugh, Amie J., Dougherty, Katy, Thomas, Anju, Miller, Christopher P., Annis, James, Fromm, Jonathan R., Song, Chaozhong, Chang, Elizabeth, Howard, Kellie, Austin, Sharon, Schmidt, Rodney A., Linenberger, Michael L., Becker, Pamela S., Senecal, Francis M., Mecham, Brigham H., Lee, Su-In, Madan, Anup, Ronen, Roy, Dutkowski, Janusz, Heimfeld, Shelly, Wood, Brent L., Stilwell, Jackie L., Kaldjian, Eric P., Haussler, David, Zhu, Jingchun
الحاوية / القاعدة J Natl Compr Canc Netw (2016)