Subset Quantile Normalization Using Negative Control Features

द्वारा Wu, Zhijin, Aryee, Martin J.
प्रकाशित 2010

diffloop: a computational framework for identifying and analyzing differential DNA loops from sequencing data

द्वारा Lareau, Caleb A, Aryee, Martin J
में प्रकाशित Bioinformatics (2018)

A cell epigenotype specific model for the correction of brain cellular heterogeneity bias and its application to age, brain region and major depression

द्वारा Guintivano, Jerry, Aryee, Martin J., Kaminsky, Zachary A.
प्रकाशित 2013

Identification of direction in gene networks from expression and methylation

द्वारा Simcha, David M, Younes, Laurent, Aryee, Martin J, Geman, Donald
में प्रकाशित BMC Syst Biol (2013)

Coverage recommendations for methylation analysis by whole genome bisulfite sequencing

द्वारा Ziller, Michael J., Hansen, Kasper D., Meissner, Alexander, Aryee, Martin J.
में प्रकाशित Nat Methods (2014)

Comprehensive High-Throughput Arrays for Relative Methylation (CHARM)

द्वारा Ladd-Acosta, Christine, Aryee, Martin J., Ordway, Jared M., Feinberg, Andrew P.
में प्रकाशित Curr Protoc Hum Genet (2010)

Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model

द्वारा Townes, F. William, Hicks, Stephanie C., Aryee, Martin J., Irizarry, Rafael A.
में प्रकाशित Genome Biol (2019)

Author Correction: Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model

द्वारा Townes, F. William, Hicks, Stephanie C., Aryee, Martin J., Irizarry, Rafael A.
में प्रकाशित Genome Biol (2020)

An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation)

द्वारा Aryee, Martin J, Gutiérrez-Pabello, José A, Kramnik, Igor, Maiti, Tapabrata, Quackenbush, John
प्रकाशित 2009

Estimating Diarrhea Mortality among Young Children in Low and Middle Income Countries

द्वारा Fischer Walker, Christa L., Aryee, Martin J., Boschi-Pinto, Cynthia, Black, Robert E.
प्रकाशित 2012

Diarrhea incidence in low- and middle-income countries in 1990 and 2010: a systematic review

द्वारा Fischer Walker, Christa L, Perin, Jamie, Aryee, Martin J, Boschi-Pinto, Cynthia, Black, Robert E
प्रकाशित 2012

A (fire)cloud-based DNA methylation data preprocessing and quality control platform

द्वारा Kangeyan, Divy, Dunford, Andrew, Iyer, Sowmya, Stewart, Chip, Hanna, Megan, Getz, Gad, Aryee, Martin J.
में प्रकाशित BMC Bioinformatics (2019)

Data-Driven Polymer Model for Mechanistic Exploration of Diploid Genome Organization

द्वारा Qi, Yifeng, Reyes, Alejandro, Johnstone, Sarah E., Aryee, Martin J., Bernstein, Bradley E., Zhang, Bin
में प्रकाशित Biophys J (2020)

CIRCLE-seq: a highly sensitive in vitro screen for genome-wide CRISPR-Cas9 nuclease off-targets

द्वारा Tsai, Shengdar Q., Nguyen, Nhu T., Malagon-Lopez, Jose, Topkar, Ved V., Aryee, Martin J., Joung, J. Keith
में प्रकाशित Nat Methods (2017)

Accurate genome-scale percentage DNA methylation estimates from microarray data

द्वारा Aryee, Martin J., Wu, Zhijin, Ladd-Acosta, Christine, Herb, Brian, Feinberg, Andrew P., Yegnasubramanian, Srinivasan, Irizarry, Rafael A.
प्रकाशित 2011

Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors

द्वारा Grünewald, Julian, Zhou, Ronghao, Garcia, Sara P., Iyer, Sowmya, Lareau, Caleb A., Aryee, Martin J., Joung, J. Keith
में प्रकाशित Nature (2019)

CRISPR DNA base editors with reduced RNA off-target and self-editing activities

द्वारा Grünewald, Julian, Zhou, Ronghao, Iyer, Sowmya, Lareau, Caleb A., Garcia, Sara P., Aryee, Martin J., Joung, J. Keith
में प्रकाशित Nat Biotechnol (2019)

Response to “Unexpected mutations after CRISPR-Cas9 editing in vivo”

द्वारा Lareau, Caleb A., Clement, Kendell, Hsu, Jonathan Y., Pattanayak, Vikram, Joung, J. Keith, Aryee, Martin J., Pinello, Luca
में प्रकाशित Nat Methods (2018)

Global Causes of Diarrheal Disease Mortality in Children <5 Years of Age: A Systematic Review

द्वारा Lanata, Claudio F., Fischer-Walker, Christa L., Olascoaga, Ana C., Torres, Carla X., Aryee, Martin J., Black, Robert E.
प्रकाशित 2013

The early pregnancy placenta foreshadows DNA methylation alterations of solid tumors

द्वारा Nordor, Akpéli V., Nehar-Belaid, Djamel, Richon, Sophie, Klatzmann, David, Bellet, Dominique, Dangles-Marie, Virginie, Fournier, Thierry, Aryee, Martin J.
में प्रकाशित Epigenetics (2017)