Ground state conditions induce rapid reorganization of core pluripotency factor binding before global epigenetic reprogramming

Por Galonska, Christina, Ziller, Michael J., Karnik, Rahul, Meissner, Alexander
Publicado no Cell Stem Cell (2015)

Coverage recommendations for methylation analysis by whole genome bisulfite sequencing

Por Ziller, Michael J., Hansen, Kasper D., Meissner, Alexander, Aryee, Martin J.
Publicado no Nat Methods (2014)

Targeted bisulfite sequencing of the dynamic DNA methylome

Por Ziller, Michael J., Stamenova, Elena K., Gu, Hongcang, Gnirke, Andreas, Meissner, Alexander
Publicado no Epigenetics Chromatin (2016)

Transcription factor binding dynamics during human ESC differentiation

Por Tsankov, Alexander M., Gu, Hongcang, Akopian, Veronika, Ziller, Michael J., Donaghey, Julie, Amit, Ido, Gnirke, Andreas, Meissner, Alexander
Publicado no Nature (2015)

Single-Cell RNA-Sequencing-Based CRISPRi Screening Resolves Molecular Drivers of Early Human Endoderm Development

Por Genga, Ryan M.J., Kernfeld, Eric M., Parsi, Krishna M., Parsons, Teagan J., Ziller, Michael J., Maehr, René
Publicado no Cell Rep (2019)

Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies

Por Dräger, Andreas, Kronfeld, Marcel, Ziller, Michael J, Supper, Jochen, Planatscher, Hannes, Magnus, Jørgen B, Oldiges, Marco, Kohlbacher, Oliver, Zell, Andreas
Publicado em 2009

The systems biology simulation core algorithm

Por Keller, Roland, Dörr, Alexander, Tabira, Akito, Funahashi, Akira, Ziller, Michael J, Adams, Richard, Rodriguez, Nicolas, Novère, Nicolas Le, Hiroi, Noriko, Planatscher, Hannes, Zell, Andreas, Dräger, Andreas
Publicado em 2013

Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types

Por Ziller, Michael J., Müller, Fabian, Liao, Jing, Zhang, Yingying, Gu, Hongcang, Bock, Christoph, Boyle, Patrick, Epstein, Charles B., Bernstein, Bradley E., Lengauer, Thomas, Gnirke, Andreas, Meissner, Alexander
Publicado em 2011

Analysing human neural stem cell ontogeny by consecutive isolation of Notch active neural progenitors

Por Edri, Reuven, Yaffe, Yakey, Ziller, Michael J., Mutukula, Naresh, Volkman, Rotem, David, Eyal, Jacob-Hirsch, Jasmine, Malcov, Hagar, Levy, Carmit, Rechavi, Gideon, Gat-Viks, Irit, Meissner, Alexander, Elkabetz, Yechiel
Publicado no Nat Commun (2015)

Charting a dynamic DNA methylation landscape of the human genome

Por Ziller, Michael J., Gu, Hongcang, Müller, Fabian, Donaghey, Julie, Tsai, Linus T.-Y., Kohlbacher, Oliver, De Jager, Phil L., Rosen, Evan D., Bennett, David A., Bernstein, Bradley E., Gnirke, Andreas, Meissner, Alexander
Publicado em 2013

Information recovery from low coverage whole-genome bisulfite sequencing

Por Libertini, Emanuele, Heath, Simon C., Hamoudi, Rifat A., Gut, Marta, Ziller, Michael J., Czyz, Agata, Ruotti, Victor, Stunnenberg, Hendrik G., Frontini, Mattia, Ouwehand, Willem H., Meissner, Alexander, Gut, Ivo G., Beck, Stephan
Publicado no Nat Commun (2016)

Genetic and epigenetic variation, but not diet, shape the sperm methylome

Por Shea, Jeremy M., Serra, Ryan W., Carone, Benjamin R., Shulha, Hennady P., Kucukural, Alper, Ziller, Michael J., Vallaster, Markus P., Gu, Hongcang, Tapper, Andrew R., Gardner, Paul D., Meissner, Alexander, Garber, Manuel, Rando, Oliver J.
Publicado no Dev Cell (2015)

Global delay in nascent strand DNA methylation

Por Charlton, Jocelyn, Downing, Timothy L., Smith, Zachary D., Gu, Hongcang, Clement, Kendell, Pop, Ramona, Akopian, Veronika, Klages, Sven, Santos, David P., Tsankov, Alexander M., Timmermann, Bernd, Ziller, Michael J., Kiskinis, Evangelos, Gnirke, Andreas, Meissner, Alexander
Publicado no Nat Struct Mol Biol (2018)

Epigenomics and chromatin dynamics

Por Akopian, Veronika, Chan, Michelle M, Clement, Kendell, Galonska, Christina, Gifford, Casey A, Lehtola, Elizabeth, Liao, Jing, Samavarchi-Tehrani, Payman, Sindhu, Camille, Smith, Zachary D, Tsankov, Alexander M, Webster, Jamie, Zhang, Yingying, Ziller, Michael J, Meissner, Alexander
Publicado em 2012

Epigenetic Memory Underlies Cell-Autonomous Heterogeneous Behavior of Hematopoietic Stem Cells

Por Yu, Vionnie W.C., Yusuf, Rushdia Z., Oki, Toshihiko, Wu, Juwell, Saez, Borja, Wang, Xin, Cook, Colleen, Baryawno, Ninib, Ziller, Michael J., Lee, Eunjung, Gu, Hongcang, Meissner, Alexander, Lin, Charles P., Kharchenko, Peter V., Scadden, David T.
Publicado no Cell (2017)

Genome-wide tracking of dCas9-methyltransferase footprints

Por Galonska, Christina, Charlton, Jocelyn, Mattei, Alexandra L., Donaghey, Julie, Clement, Kendell, Gu, Hongcang, Mohammad, Arman W., Stamenova, Elena K., Cacchiarelli, Davide, Klages, Sven, Timmermann, Bernd, Cantz, Tobias, Schöler, Hans R., Gnirke, Andreas, Ziller, Michael J., Meissner, Alexander
Publicado no Nat Commun (2018)

Genetic determinants and epigenetic effects of pioneer factor occupancy

Por Donaghey, Julie, Thakurela, Sudhir, Charlton, Jocelyn, Chen, Jennifer, Smith, Zachary D., Gu, Hongcang, Pop, Ramona, Clement, Kendell, Stamenova, Elena, Karnik, Rahul, Kelley, David R., Gifford, Casey A., Cacchiarelli, Davide, Rinn, John L., Gnirke, Andreas, Ziller, Michael J., Meissner, Alexander
Publicado no Nat Genet (2018)

Dissecting the Functional Consequences of de Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology

Por Ziller, Michael J., Ortega, Juan A., Quinlan, Katharina A., Santos, David P., Gu, Hongcang, Martin, Eric J., Galonska, Christina, Pop, Ramona, Maidl, Susanne, Di Pardo, Alba, Huang, Mei, Meltzer, Herbert Y., Gnirke, Andreas, Heckman, CJ, Meissner, Alexander, Kiskinis, Evangelos
Publicado no Cell Stem Cell (2018)

A stably self-renewing adult blood-derived induced neural stem cell exhibiting patternability and epigenetic rejuvenation

Por Sheng, Chao, Jungverdorben, Johannes, Wiethoff, Hendrik, Lin, Qiong, Flitsch, Lea J., Eckert, Daniela, Hebisch, Matthias, Fischer, Julia, Kesavan, Jaideep, Weykopf, Beatrice, Schneider, Linda, Holtkamp, Dominik, Beck, Heinz, Till, Andreas, Wüllner, Ullrich, Ziller, Michael J., Wagner, Wolfgang, Peitz, Michael, Brüstle, Oliver
Publicado no Nat Commun (2018)

Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells

Por Liao, Jing, Karnik, Rahul, Gu, Hongcang, Ziller, Michael J., Clement, Kendell, Tsankov, Alexander M., Akopian, Veronika, Gifford, Casey A., Donaghey, Julie, Galonska, Christina, Pop, Ramona, Reyon, Deepak, Tsai, Shengdar Q., Mallard, William, Joung, J. Keith, Rinn, John L., Gnirke, Andreas, Meissner, Alexander
Publicado no Nat Genet (2015)