Linking gene expression to phenotypes via pathway information

Por Papatheodorou, Irene, Oellrich, Anika, Smedley, Damian
Publicado no J Biomed Semantics (2015)

Comparison of the mammalian insulin signalling pathway to invertebrates in the context of FOXO-mediated ageing

Por Papatheodorou, Irene, Petrovs, Rudolfs, Thornton, Janet M.
Publicado em 2014

Using association rule mining to determine promising secondary phenotyping hypotheses

Por Oellrich, Anika, Jacobsen, Julius, Papatheodorou, Irene, Smedley, Damian
Publicado em 2014

Computational biology for ageing

Por Wieser, Daniela, Papatheodorou, Irene, Ziehm, Matthias, Thornton, Janet M.
Publicado em 2011

Transcriptional feedback in the insulin signalling pathway modulates ageing in both Caenorhabditis elegans and Drosophila melanogaster

Por Ivanov, Dobril K., Papatheodorou, Irene, Ziehm, Matthias, Thornton, Janet M.
Publicado em 2013

Using Answer Set Programming to Integrate RNA Expression with Signalling Pathway Information to Infer How Mutations Affect Ageing

Por Papatheodorou, Irene, Ziehm, Matthias, Wieser, Daniela, Alic, Nazif, Partridge, Linda, Thornton, Janet M.
Publicado em 2012

A metadata approach for clinical data management in translational genomics studies in breast cancer

Por Papatheodorou, Irene, Crichton, Charles, Morris, Lorna, Maccallum, Peter, Davies, Jim, Brenton, James D, Caldas, Carlos
Publicado em 2009

Comparative Transcriptome Analysis of the Regenerating Zebrafish Telencephalon Unravels a Resource With Key Pathways During Two Early Stages and Activation of Wnt/β-Catenin Signali...

Por Demirci, Yeliz, Cucun, Gokhan, Poyraz, Yusuf Kaan, Mohammed, Suhaib, Heger, Guillaume, Papatheodorou, Irene, Ozhan, Gunes
Publicado no Front Cell Dev Biol (2020)

Interplay of dFOXO and Two ETS-Family Transcription Factors Determines Lifespan in Drosophila melanogaster

Por Alic, Nazif, Giannakou, Maria E., Papatheodorou, Irene, Hoddinott, Matthew P., Andrews, T. Daniel, Bolukbasi, Ekin, Partridge, Linda
Publicado em 2014

An integrated landscape of protein expression in human cancer

Por Jarnuczak, Andrew F., Najgebauer, Hanna, Barzine, Mitra, Kundu, Deepti J., Ghavidel, Fatemeh, Perez-Riverol, Yasset, Papatheodorou, Irene, Brazma, Alvis, Vizcaíno, Juan Antonio
Publicado no Sci Data (2021)

Genome-wide dFOXO targets and topology of the transcriptomic response to stress and insulin signalling

Por Alic, Nazif, Andrews, T Daniel, Giannakou, Maria E, Papatheodorou, Irene, Slack, Cathy, Hoddinott, Matthew P, Cochemé, Helena M, Schuster, Eugene F, Thornton, Janet M, Partridge, Linda
Publicado em 2011

ArrayExpress update – from bulk to single-cell expression data

Por Athar, Awais, Füllgrabe, Anja, George, Nancy, Iqbal, Haider, Huerta, Laura, Ali, Ahmed, Snow, Catherine, Fonseca, Nuno A, Petryszak, Robert, Papatheodorou, Irene, Sarkans, Ugis, Brazma, Alvis
Publicado no Nucleic Acids Res (2019)

MDL-1, a growth- and tumor-suppressor, slows aging and prevents germline hyperplasia and hypertrophy in C. elegans

Por Riesen, Michèle, Feyst, Inna, Rattanavirotkul, Nattaphong, Ezcurra, Marina, Tullet, Jennifer M.A., Papatheodorou, Irene, Ziehm, Matthias, Au, Catherine, Gilliat, Ann F., Hellberg, Josephine, Thornton, Janet M., Gems, David
Publicado em 2014

From ArrayExpress to BioStudies

Por Sarkans, Ugis, Füllgrabe, Anja, Ali, Ahmed, Athar, Awais, Behrangi, Ehsan, Diaz, Nestor, Fexova, Silvie, George, Nancy, Iqbal, Haider, Kurri, Sandeep, Munoz, Jhoan, Rada, Juan, Papatheodorou, Irene, Brazma, Alvis
Publicado no Nucleic Acids Res (2020)

DAF-16/FoxO Directly Regulates an Atypical AMP-Activated Protein Kinase Gamma Isoform to Mediate the Effects of Insulin/IGF-1 Signaling on Aging in Caenorhabditis elegans

Por Tullet, Jennifer M. A., Araiz, Caroline, Sanders, Matthew J., Au, Catherine, Benedetto, Alexandre, Papatheodorou, Irene, Clark, Emily, Schmeisser, Kathrin, Jones, Daniel, Schuster, Eugene F., Thornton, Janet M., Gems, David
Publicado em 2014

Plant Reactome: a knowledgebase and resource for comparative pathway analysis

Por Naithani, Sushma, Gupta, Parul, Preece, Justin, D’Eustachio, Peter, Elser, Justin L, Garg, Priyanka, Dikeman, Daemon A, Kiff, Jason, Cook, Justin, Olson, Andrew, Wei, Sharon, Tello-Ruiz, Marcela K, Mundo, Antonio Fabregat, Munoz-Pomer, Alfonso, Mohammed, Suhaib, Cheng, Tiejun, Bolton, Evan, Papatheodorou, Irene, Stein, Lincoln, Ware, Doreen, Jaiswal, Pankaj
Publicado no Nucleic Acids Res (2020)

Expression Atlas: gene and protein expression across multiple studies and organisms

Por Papatheodorou, Irene, Fonseca, Nuno A, Keays, Maria, Tang, Y Amy, Barrera, Elisabet, Bazant, Wojciech, Burke, Melissa, Füllgrabe, Anja, Fuentes, Alfonso Muñoz-Pomer, George, Nancy, Huerta, Laura, Koskinen, Satu, Mohammed, Suhaib, Geniza, Matthew, Preece, Justin, Jaiswal, Pankaj, Jarnuczak, Andrew F, Huber, Wolfgang, Stegle, Oliver, Vizcaino, Juan Antonio, Brazma, Alvis, Petryszak, Robert
Publicado no Nucleic Acids Res (2018)

A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

Por Tekman, Mehmet, Batut, Bérénice, Ostrovsky, Alexander, Antoniewski, Christophe, Clements, Dave, Ramirez, Fidel, Etherington, Graham J, Hotz, Hans-Rudolf, Scholtalbers, Jelle, Manning, Jonathan R, Bellenger, Lea, Doyle, Maria A, Heydarian, Mohammad, Huang, Ni, Soranzo, Nicola, Moreno, Pablo, Mautner, Stefan, Papatheodorou, Irene, Nekrutenko, Anton, Taylor, James, Blankenberg, Daniel, Backofen, Rolf, Grüning, Björn
Publicado no Gigascience (2020)

Expression Atlas update: from tissues to single cells

Por Papatheodorou, Irene, Moreno, Pablo, Manning, Jonathan, Fuentes, Alfonso Muñoz-Pomer, George, Nancy, Fexova, Silvie, Fonseca, Nuno A, Füllgrabe, Anja, Green, Matthew, Huang, Ni, Huerta, Laura, Iqbal, Haider, Jianu, Monica, Mohammed, Suhaib, Zhao, Lingyun, Jarnuczak, Andrew F, Jupp, Simon, Marioni, John, Meyer, Kerstin, Petryszak, Robert, Prada Medina, Cesar Augusto, Talavera-López, Carlos, Teichmann, Sarah, Vizcaino, Juan Antonio, Brazma, Alvis
Publicado no Nucleic Acids Res (2020)

A user guide for the online exploration and visualization of PCAWG data

Por Goldman, Mary J., Zhang, Junjun, Fonseca, Nuno A., Cortés-Ciriano, Isidro, Xiang, Qian, Craft, Brian, Piñeiro-Yáñez, Elena, O’Connor, Brian D., Bazant, Wojciech, Barrera, Elisabet, Muñoz-Pomer, Alfonso, Petryszak, Robert, Füllgrabe, Anja, Al-Shahrour, Fatima, Keays, Maria, Haussler, David, Weinstein, John N., Huber, Wolfgang, Valencia, Alfonso, Park, Peter J., Papatheodorou, Irene, Zhu, Jingchun, Ferretti, Vincent, Vazquez, Miguel
Publicado no Nat Commun (2020)