Minimum Information About a Microarray Experiment (MIAME) – Successes, Failures, Challenges

di Brazma, Alvis
Pubblicato in ScientificWorldJournal (2009)

Modelling in molecular biology: describing transcription regulatory networks at different scales

di Schlitt, Thomas, Brazma, Alvis
Pubblicazione 2006

Current approaches to gene regulatory network modelling

di Schlitt, Thomas, Brazma, Alvis
Pubblicazione 2007

Learning About Gene Regulatory Networks From Gene Deletion Experiments

di Schlitt, Thomas, Brazma, Alvis
Pubblicazione 2002

Visualization of large microarray experiments with space maps

di Gehlenborg, Nils, Brazma, Alvis
Pubblicazione 2009

clustComp, a bioconductor package for the comparison of clustering results

di Torrente, Aurora, Brazma, Alvis
Pubblicato in Bioinformatics (2017)

RNA-Seq Gene Profiling - A Systematic Empirical Comparison

di Fonseca, Nuno A., Marioni, John, Brazma, Alvis
Pubblicazione 2014

The BioStudies database

di McEntyre, Jo, Sarkans, Ugis, Brazma, Alvis
Pubblicato in Mol Syst Biol (2015)

Towards reconstruction of gene networks from expression data by supervised learning

di Soinov, Lev A, Krestyaninova, Maria A, Brazma, Alvis
Pubblicazione 2003

Predicting Gene Regulatory Elements in Silico on a Genomic Scale

di Brāzma, Alvis, Jonassen, Inge, Vilo, Jaak, Ukkonen, Esko
Pubblicazione 1998

A pipeline for RNA-seq data processing and quality assessment

di Goncalves, Angela, Tikhonov, Andrew, Brazma, Alvis, Kapushesky, Misha
Pubblicazione 2011

Contributions of transcription and mRNA decay to gene expression dynamics of fission yeast in response to oxidative stress

di Marguerat, Samuel, Lawler, Katherine, Brazma, Alvis, Bähler, Jürg
Pubblicazione 2014

Cellular phenotype database: a repository for systems microscopy data

di Kirsanova, Catherine, Brazma, Alvis, Rustici, Gabriella, Sarkans, Ugis
Pubblicato in Bioinformatics (2015)

Prediction of Gene Expression in Embryonic Structures of Drosophila melanogaster

di Samsonova, Anastasia A, Niranjan, Mahesan, Russell, Steven, Brazma, Alvis
Pubblicazione 2007

Large scale comparison of global gene expression patterns in human and mouse

di Zheng-Bradley, Xiangqun, Rung, Johan, Parkinson, Helen, Brazma, Alvis
Pubblicazione 2010

Probabilistic retrieval and visualization of biologically relevant microarray experiments

di Caldas, José, Gehlenborg, Nils, Faisal, Ali, Brazma, Alvis, Kaski, Samuel
Pubblicazione 2009

Probabilistic retrieval and visualization of biologically relevant microarray experiments

di Caldas, José, Gehlenborg, Nils, Faisal, Ali, Brazma, Alvis, Kaski, Samuel
Pubblicazione 2009

Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum

di Lawler, Katherine, Hammond-Kosack, Kim, Brazma, Alvis, Coulson, Richard MR
Pubblicazione 2013

Dynamics of gene regulatory networks and their dependence on network topology and quantitative parameters – the case of phage λ

di Ruklisa, Dace, Brazma, Alvis, Cerans, Karlis, Schlitt, Thomas, Viksna, Juris
Pubblicato in BMC Bioinformatics (2019)

A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases

di Lahti, Leo, Torrente, Aurora, Elo, Laura L., Brazma, Alvis, Rung, Johan
Pubblicazione 2013