Unraveling nature's networks

Por Soinov, Lev, Kapushesky, Misha
Publicado em 2003

A pipeline for RNA-seq data processing and quality assessment

Por Goncalves, Angela, Tikhonov, Andrew, Brazma, Alvis, Kapushesky, Misha
Publicado em 2011

Importing ArrayExpress datasets into R/Bioconductor

Por Kauffmann, Audrey, Rayner, Tim F., Parkinson, Helen, Kapushesky, Misha, Lukk, Margus, Brazma, Alvis, Huber, Wolfgang
Publicado em 2009

A global map of human gene expression

Por Lukk, Margus, Kapushesky, Misha, Nikkilä, Janne, Parkinson, Helen, Goncalves, Angela, Huber, Wolfgang, Ukkonen, Esko, Brazma, Alvis
Publicado em 2010

Modeling sample variables with an Experimental Factor Ontology

Por Malone, James, Holloway, Ele, Adamusiak, Tomasz, Kapushesky, Misha, Zheng, Jie, Kolesnikov, Nikolay, Zhukova, Anna, Brazma, Alvis, Parkinson, Helen
Publicado em 2010

Gene Expression Atlas at the European Bioinformatics Institute

Por Kapushesky, Misha, Emam, Ibrahim, Holloway, Ele, Kurnosov, Pavel, Zorin, Andrey, Malone, James, Rustici, Gabriella, Williams, Eleanor, Parkinson, Helen, Brazma, Alvis
Publicado em 2010

OntoCAT -- simple ontology search and integration in Java, R and REST/JavaScript

Por Adamusiak, Tomasz, Burdett, Tony, Kurbatova, Natalja, Joeri van der Velde, K, Abeygunawardena, Niran, Antonakaki, Despoina, Kapushesky, Misha, Parkinson, Helen, Swertz, Morris A
Publicado em 2011

Low level genome mistranslations deregulate the transcriptome and translatome and generate proteotoxic stress in yeast

Por Paredes, João A, Carreto, Laura, Simões, João, Bezerra, Ana R, Gomes, Ana C, Santamaria, Rodrigo, Kapushesky, Misha, Moura, Gabriela R, Santos, Manuel AS
Publicado em 2012

Expression Profiler: next generation—an online platform for analysis of microarray data

Por Kapushesky, Misha, Kemmeren, Patrick, Culhane, Aedín C., Durinck, Steffen, Ihmels, Jan, Körner, Christine, Kull, Meelis, Torrente, Aurora, Sarkans, Ugis, Vilo, Jaak, Brazma, Alvis
Publicado em 2004

Mitochondrial Complex I Is a Global Regulator of Secondary Metabolism, Virulence and Azole Sensitivity in Fungi

Por Bromley, Mike, Johns, Anna, Davies, Emma, Fraczek, Marcin, Mabey Gilsenan, Jane, Kurbatova, Natalya, Keays, Maria, Kapushesky, Misha, Gut, Marta, Gut, Ivo, Denning, David W., Bowyer, Paul
Publicado no PLoS One (2016)

Correction: Mitochondrial Complex I Is a Global Regulator of Secondary Metabolism, Virulence and Azole Sensitivity in Fungi

Por Bromley, Mike, Johns, Anna, Davies, Emma, Fraczek, Marcin, Gilsenan, Jane Mabey, Kurbatova, Natalya, Keays, Maria, Kapushesky, Misha, Gut, Marta, Gut, Ivo, Denning, David W., Bowyer, Paul
Publicado no PLoS One (2017)

Deciphering the mechanism of action of 089, a compound impairing the fungal cell cycle

Por Stefanini, Irene, Rizzetto, Lisa, Rivero, Damariz, Carbonell, Silvia, Gut, Marta, Heath, Simon, Gut, Ivo G., Trabocchi, Andrea, Guarna, Antonio, Ben Ghazzi, Nagwa, Bowyer, Paul, Kapushesky, Misha, Cavalieri, Duccio
Publicado no Sci Rep (2018)

ArrayExpress—a public repository for microarray gene expression data at the EBI

Por Brazma, Alvis, Parkinson, Helen, Sarkans, Ugis, Shojatalab, Mohammadreza, Vilo, Jaak, Abeygunawardena, Niran, Holloway, Ele, Kapushesky, Misha, Kemmeren, Patrick, Lara, Gonzalo Garcia, Oezcimen, Ahmet, Rocca-Serra, Philippe, Sansone, Susanna-Assunta
Publicado em 2003

4DXpress: a database for cross-species expression pattern comparisons

Por Haudry, Yannick, Berube, Hugo, Letunic, Ivica, Weeber, Paul-Daniel, Gagneur, Julien, Girardot, Charles, Kapushesky, Misha, Arendt, Detlev, Bork, Peer, Brazma, Alvis, Furlong, Eileen E. M., Wittbrodt, Joachim, Henrich, Thorsten
Publicado em 2008

Reversion of a fungal genetic code alteration links proteome instability with genomic and phenotypic diversification

Por Bezerra, Ana R., Simões, João, Lee, Wanseon, Rung, Johan, Weil, Tobias, Gut, Ivo G., Gut, Marta, Bayés, Mónica, Rizzetto, Lisa, Cavalieri, Duccio, Giovannini, Gloria, Bozza, Silvia, Romani, Luigina, Kapushesky, Misha, Moura, Gabriela R., Santos, Manuel A. S.
Publicado em 2013

Genomic and Phenotypic Variation in Morphogenetic Networks of Two Candida albicans Isolates Subtends Their Different Pathogenic Potential

Por Cavalieri, Duccio, Di Paola, Monica, Rizzetto, Lisa, Tocci, Noemi, De Filippo, Carlotta, Lionetti, Paolo, Ardizzoni, Andrea, Colombari, Bruna, Paulone, Simona, Gut, Ivo G., Berná, Luisa, Gut, Marta, Blanc, Julie, Kapushesky, Misha, Pericolini, Eva, Blasi, Elisabetta, Peppoloni, Samuele
Publicado no Front Immunol (2018)

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

Por Culhane, Aedín C., Schröder, Markus S., Sultana, Razvan, Picard, Shaita C., Martinelli, Enzo N., Kelly, Caroline, Haibe-Kains, Benjamin, Kapushesky, Misha, St Pierre, Anne-Alyssa, Flahive, William, Picard, Kermshlise C., Gusenleitner, Daniel, Papenhausen, Gerald, O'Connor, Niall, Correll, Mick, Quackenbush, John
Publicado em 2012

Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments

Por Kapushesky, Misha, Adamusiak, Tomasz, Burdett, Tony, Culhane, Aedin, Farne, Anna, Filippov, Alexey, Holloway, Ele, Klebanov, Andrey, Kryvych, Nataliya, Kurbatova, Natalja, Kurnosov, Pavel, Malone, James, Melnichuk, Olga, Petryszak, Robert, Pultsin, Nikolay, Rustici, Gabriella, Tikhonov, Andrew, Travillian, Ravensara S., Williams, Eleanor, Zorin, Andrey, Parkinson, Helen, Brazma, Alvis
Publicado em 2012

ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression

Por Parkinson, Helen, Kapushesky, Misha, Kolesnikov, Nikolay, Rustici, Gabriella, Shojatalab, Mohammad, Abeygunawardena, Niran, Berube, Hugo, Dylag, Miroslaw, Emam, Ibrahim, Farne, Anna, Holloway, Ele, Lukk, Margus, Malone, James, Mani, Roby, Pilicheva, Ekaterina, Rayner, Tim F., Rezwan, Faisal, Sharma, Anjan, Williams, Eleanor, Bradley, Xiangqun Zheng, Adamusiak, Tomasz, Brandizi, Marco, Burdett, Tony, Coulson, Richard, Krestyaninova, Maria, Kurnosov, Pavel, Maguire, Eamonn, Neogi, Sudeshna Guha, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Sklyar, Nataliya, Zhao, Mengyao, Sarkans, Ugis, Brazma, Alvis
Publicado em 2009