Disease ontologies for knowledge graphs

Bằng Kurbatova, Natalja, Swiers, Rowan
Xuất bản năm BMC Bioinformatics (2021)

graph2tab, a library to convert experimental workflow graphs into tabular formats

Bằng Brandizi, Marco, Kurbatova, Natalja, Sarkans, Ugis, Rocca-Serra, Philippe
Được phát hành 2012

IsoCleft Finder – a web-based tool for the detection and analysis of protein binding-site geometric and chemical similarities

Bằng Kurbatova, Natalja, Chartier, Matthieu, Zylber, María Inés, Najmanovich, Rafael
Được phát hành 2013

PhenStat: A Tool Kit for Standardized Analysis of High Throughput Phenotypic Data

Bằng Kurbatova, Natalja, Mason, Jeremy C., Morgan, Hugh, Meehan, Terrence F., Karp, Natasha A.
Xuất bản năm PLoS One (2015)

OntoCAT -- simple ontology search and integration in Java, R and REST/JavaScript

Bằng Adamusiak, Tomasz, Burdett, Tony, Kurbatova, Natalja, Joeri van der Velde, K, Abeygunawardena, Niran, Antonakaki, Despoina, Kapushesky, Misha, Parkinson, Helen, Swertz, Morris A
Được phát hành 2011

A System for Information Management in BioMedical Studies—SIMBioMS

Bằng Krestyaninova, Maria, Zarins, Andris, Viksna, Juris, Kurbatova, Natalja, Rucevskis, Peteris, Neogi, Sudeshna Guha, Gostev, Mike, Perheentupa, Teemu, Knuuttila, Juha, Barrett, Amy, Lappalainen, Ilkka, Rung, Johan, Podnieks, Karlis, Sarkans, Ugis, McCarthy, Mark I, Brazma, Alvis
Được phát hành 2009

ArrayExpress update—simplifying data submissions

Bằng Kolesnikov, Nikolay, Hastings, Emma, Keays, Maria, Melnichuk, Olga, Tang, Y. Amy, Williams, Eleanor, Dylag, Miroslaw, Kurbatova, Natalja, Brandizi, Marco, Burdett, Tony, Megy, Karyn, Pilicheva, Ekaterina, Rustici, Gabriella, Tikhonov, Andrew, Parkinson, Helen, Petryszak, Robert, Sarkans, Ugis, Brazma, Alvis
Xuất bản năm Nucleic Acids Res (2014)

ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments

Bằng Parkinson, Helen, Sarkans, Ugis, Kolesnikov, Nikolay, Abeygunawardena, Niran, Burdett, Tony, Dylag, Miroslaw, Emam, Ibrahim, Farne, Anna, Hastings, Emma, Holloway, Ele, Kurbatova, Natalja, Lukk, Margus, Malone, James, Mani, Roby, Pilicheva, Ekaterina, Rustici, Gabriella, Sharma, Anjan, Williams, Eleanor, Adamusiak, Tomasz, Brandizi, Marco, Sklyar, Nataliya, Brazma, Alvis
Được phát hành 2011

Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments

Bằng Kapushesky, Misha, Adamusiak, Tomasz, Burdett, Tony, Culhane, Aedin, Farne, Anna, Filippov, Alexey, Holloway, Ele, Klebanov, Andrey, Kryvych, Nataliya, Kurbatova, Natalja, Kurnosov, Pavel, Malone, James, Melnichuk, Olga, Petryszak, Robert, Pultsin, Nikolay, Rustici, Gabriella, Tikhonov, Andrew, Travillian, Ravensara S., Williams, Eleanor, Zorin, Andrey, Parkinson, Helen, Brazma, Alvis
Được phát hành 2012

ArrayExpress update—trends in database growth and links to data analysis tools

Bằng Rustici, Gabriella, Kolesnikov, Nikolay, Brandizi, Marco, Burdett, Tony, Dylag, Miroslaw, Emam, Ibrahim, Farne, Anna, Hastings, Emma, Ison, Jon, Keays, Maria, Kurbatova, Natalja, Malone, James, Mani, Roby, Mupo, Annalisa, Pedro Pereira, Rui, Pilicheva, Ekaterina, Rung, Johan, Sharma, Anjan, Tang, Y. Amy, Ternent, Tobias, Tikhonov, Andrew, Welter, Danielle, Williams, Eleanor, Brazma, Alvis, Parkinson, Helen, Sarkans, Ugis
Được phát hành 2013

Urinary metabolic phenotyping for Alzheimer’s disease

Bằng Kurbatova, Natalja, Garg, Manik, Whiley, Luke, Chekmeneva, Elena, Jiménez, Beatriz, Gómez-Romero, María, Pearce, Jake, Kimhofer, Torben, D’Hondt, Ellie, Soininen, Hilkka, Kłoszewska, Iwona, Mecocci, Patrizia, Tsolaki, Magda, Vellas, Bruno, Aarsland, Dag, Nevado-Holgado, Alejo, Liu, Benjamine, Snowden, Stuart, Proitsi, Petroula, Ashton, Nicholas J., Hye, Abdul, Legido-Quigley, Cristina, Lewis, Matthew R., Nicholson, Jeremy K., Holmes, Elaine, Brazma, Alvis, Lovestone, Simon
Xuất bản năm Sci Rep (2020)

The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data

Bằng Koscielny, Gautier, Yaikhom, Gagarine, Iyer, Vivek, Meehan, Terrence F., Morgan, Hugh, Atienza-Herrero, Julian, Blake, Andrew, Chen, Chao-Kung, Easty, Richard, Di Fenza, Armida, Fiegel, Tanja, Grifiths, Mark, Horne, Alan, Karp, Natasha A., Kurbatova, Natalja, Mason, Jeremy C., Matthews, Peter, Oakley, Darren J., Qazi, Asfand, Regnart, Jack, Retha, Ahmad, Santos, Luis A., Sneddon, Duncan J., Warren, Jonathan, Westerberg, Henrik, Wilson, Robert J., Melvin, David G., Smedley, Damian, Brown, Steve D. M., Flicek, Paul, Skarnes, William C., Mallon, Ann-Marie, Parkinson, Helen
Được phát hành 2014

Applying the ARRIVE Guidelines to an In Vivo Database

Bằng Karp, Natasha A., Meehan, Terry F., Morgan, Hugh, Mason, Jeremy C., Blake, Andrew, Kurbatova, Natalja, Smedley, Damian, Jacobsen, Julius, Mott, Richard F., Iyer, Vivek, Matthews, Peter, Melvin, David G., Wells, Sara, Flenniken, Ann M., Masuya, Hiroshi, Wakana, Shigeharu, White, Jacqueline K., Lloyd, K. C. Kent, Reynolds, Corey L., Paylor, Richard, West, David B., Svenson, Karen L., Chesler, Elissa J., de Angelis, Martin Hrabě, Tocchini-Valentini, Glauco P., Sorg, Tania, Herault, Yann, Parkinson, Helen, Mallon, Ann-Marie, Brown, Steve D. M.
Xuất bản năm PLoS Biol (2015)

An integrated genomic analysis of anaplastic meningioma identifies prognostic molecular signatures

Bằng Collord, Grace, Tarpey, Patrick, Kurbatova, Natalja, Martincorena, Inigo, Moran, Sebastian, Castro, Manuel, Nagy, Tibor, Bignell, Graham, Maura, Francesco, Young, Matthew D., Berna, Jorge, Tubio, Jose M. C., McMurran, Chris E., Young, Adam M. H., Sanders, Mathijs, Noorani, Imran, Price, Stephen J., Watts, Colin, Leipnitz, Elke, Kirsch, Matthias, Schackert, Gabriele, Pearson, Danita, Devadass, Abel, Ram, Zvi, Collins, V. Peter, Allinson, Kieren, Jenkinson, Michael D., Zakaria, Rasheed, Syed, Khaja, Hanemann, C. Oliver, Dunn, Jemma, McDermott, Michael W., Kirollos, Ramez W., Vassiliou, George S., Esteller, Manel, Behjati, Sam, Brazma, Alvis, Santarius, Thomas, McDermott, Ultan
Xuất bản năm Sci Rep (2018)

Prevalence of sexual dimorphism in mammalian phenotypic traits

Bằng Karp, Natasha A., Mason, Jeremy, Beaudet, Arthur L., Benjamini, Yoav, Bower, Lynette, Braun, Robert E., Brown, Steve D.M., Chesler, Elissa J., Dickinson, Mary E., Flenniken, Ann M., Fuchs, Helmut, Angelis, Martin Hrabe de, Gao, Xiang, Guo, Shiying, Greenaway, Simon, Heller, Ruth, Herault, Yann, Justice, Monica J., Kurbatova, Natalja, Lelliott, Christopher J., Lloyd, K.C. Kent, Mallon, Ann-Marie, Mank, Judith E., Masuya, Hiroshi, McKerlie, Colin, Meehan, Terrence F., Mott, Richard F., Murray, Stephen A., Parkinson, Helen, Ramirez-Solis, Ramiro, Santos, Luis, Seavitt, John R., Smedley, Damian, Sorg, Tania, Speak, Anneliese O., Steel, Karen P., Svenson, Karen L., Wakana, Shigeharu, West, David, Wells, Sara, Westerberg, Henrik, Yaacoby, Shay, White, Jacqueline K.
Xuất bản năm Nat Commun (2017)

Transcriptome and genome sequencing uncovers functional variation in humans

Bằng Lappalainen, Tuuli, Sammeth, Michael, Friedländer, Marc R, ‘t Hoen, Peter AC, Monlong, Jean, Rivas, Manuel A, Gonzàlez-Porta, Mar, Kurbatova, Natalja, Griebel, Thasso, Ferreira, Pedro G, Barann, Matthias, Wieland, Thomas, Greger, Liliana, van Iterson, Maarten, Almlöf, Jonas, Ribeca, Paolo, Pulyakhina, Irina, Esser, Daniela, Giger, Thomas, Tikhonov, Andrew, Sultan, Marc, Bertier, Gabrielle, MacArthur, Daniel G, Lek, Monkol, Lizano, Esther, Buermans, Henk PJ, Padioleau, Ismael, Schwarzmayr, Thomas, Karlberg, Olof, Ongen, Halit, Kilpinen, Helena, Beltran, Sergi, Gut, Marta, Kahlem, Katja, Amstislavskiy, Vyacheslav, Stegle, Oliver, Pirinen, Matti, Montgomery, Stephen B, Donnelly, Peter, McCarthy, Mark I, Flicek, Paul, Strom, Tim M, Lehrach, Hans, Schreiber, Stefan, Sudbrak, Ralf, Carracedo, Ángel, Antonarakis, Stylianos E, Häsler, Robert, Syvänen, Ann-Christine, van Ommen, Gert-Jan, Brazma, Alvis, Meitinger, Thomas, Rosenstiel, Philip, Guigó, Roderic, Gut, Ivo G, Estivill, Xavier, Dermitzakis, Emmanouil T
Được phát hành 2013

A large scale hearing loss screen reveals an extensive unexplored genetic landscape for auditory dysfunction

Bằng Bowl, Michael R., Simon, Michelle M., Ingham, Neil J., Greenaway, Simon, Santos, Luis, Cater, Heather, Taylor, Sarah, Mason, Jeremy, Kurbatova, Natalja, Pearson, Selina, Bower, Lynette R., Clary, Dave A., Meziane, Hamid, Reilly, Patrick, Minowa, Osamu, Kelsey, Lois, Tocchini-Valentini, Glauco P., Gao, Xiang, Bradley, Allan, Skarnes, William C., Moore, Mark, Beaudet, Arthur L., Justice, Monica J., Seavitt, John, Dickinson, Mary E., Wurst, Wolfgang, de Angelis, Martin Hrabe, Herault, Yann, Wakana, Shigeharu, Nutter, Lauryl M. J., Flenniken, Ann M., McKerlie, Colin, Murray, Stephen A., Svenson, Karen L., Braun, Robert E., West, David B., Lloyd, K. C. Kent, Adams, David J., White, Jacqui, Karp, Natasha, Flicek, Paul, Smedley, Damian, Meehan, Terrence F., Parkinson, Helen E., Teboul, Lydia M., Wells, Sara, Steel, Karen P., Mallon, Ann-Marie, Brown, Steve D. M.
Xuất bản năm Nat Commun (2017)