Confounding Effects in “A Six-Gene Signature Predicting Breast Cancer Lung Metastasis”

Por Culhane, Aedín C., Quackenbush, John
Publicado em 2009

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

Por Culhane, Aedín C, Perrière, Guy, Higgins, Desmond G
Publicado em 2003

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data

Por Jeffery, Ian B, Higgins, Desmond G, Culhane, Aedín C
Publicado em 2006

survcomp: an R/Bioconductor package for performance assessment and comparison of survival models

Por Schröder, Markus S., Culhane, Aedín C., Quackenbush, John, Haibe-Kains, Benjamin
Publicado em 2011

A multivariate approach to the integration of multi-omics datasets

Por Meng, Chen, Kuster, Bernhard, Culhane, Aedín C, Gholami, Amin Moghaddas
Publicado em 2014

iBBiG: iterative binary bi-clustering of gene sets

Por Gusenleitner, Daniel, Howe, Eleanor A., Bentink, Stefan, Quackenbush, John, Culhane, Aedín C.
Publicado em 2012

RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface

Por Schröder, Markus S., Gusenleitner, Daniel, Quackenbush, John, Culhane, Aedín C., Haibe-Kains, Benjamin
Publicado em 2013

Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data

Por Baty, Florent, Bihl, Michel P, Perrière, Guy, Culhane, Aedín C, Brutsche, Martin H
Publicado em 2005

A Three-Gene Model to Robustly Identify Breast Cancer Molecular Subtypes

Por Haibe-Kains, Benjamin, Desmedt, Christine, Loi, Sherene, Culhane, Aedin C., Bontempi, Gianluca, Quackenbush, John, Sotiriou, Christos
Publicado em 2012

Dimension reduction techniques for the integrative analysis of multi-omics data

Por Meng, Chen, Zeleznik, Oana A., Thallinger, Gerhard G., Kuster, Bernhard, Gholami, Amin M., Culhane, Aedín C.
Publicado no Brief Bioinform (2016)

Functional Classification Analysis of Somatically Mutated Genes in Human Breast and Colorectal Cancers

Por Chittenden, Thomas W., Howe, Eleanor A., Culhane, Aedin C., Sultana, Razvan, Taylor, Jennifer M., Holmes, Chris, Quackenbush, John
Publicado em 2008

Stem Cell-Like Gene Expression in Ovarian Cancer Predicts Type II Subtype and Prognosis

Por Schwede, Matthew, Spentzos, Dimitrios, Bentink, Stefan, Hofmann, Oliver, Haibe-Kains, Benjamin, Harrington, David, Quackenbush, John, Culhane, Aedín C.
Publicado em 2013

RAP80 Targets BRCA1 to Specific Ubiquitin Structures at DNA Damage Sites

Por Sobhian, Bijan, Shao, Genze, Lilli, Dana R., Culhane, Aedín C., Moreau, Lisa A., Xia, Bing, Livingston, David M., Greenberg, Roger A.
Publicado em 2007

Expression Profiler: next generation—an online platform for analysis of microarray data

Por Kapushesky, Misha, Kemmeren, Patrick, Culhane, Aedín C., Durinck, Steffen, Ihmels, Jan, Körner, Christine, Kull, Meelis, Torrente, Aurora, Sarkans, Ugis, Vilo, Jaak, Brazma, Alvis
Publicado em 2004

Risk Prediction for Late-Stage Ovarian Cancer by Meta-analysis of 1525 Patient Samples

Por Riester, Markus, Wei, Wei, Waldron, Levi, Culhane, Aedin C., Trippa, Lorenzo, Oliva, Esther, Kim, Sung-hoon, Michor, Franziska, Huttenhower, Curtis, Parmigiani, Giovanni, Birrer, Michael J.
Publicado no J Natl Cancer Inst (2014)

Significance Analysis of Prognostic Signatures

Por Beck, Andrew H., Knoblauch, Nicholas W., Hefti, Marco M., Kaplan, Jennifer, Schnitt, Stuart J., Culhane, Aedin C., Schroeder, Markus S., Risch, Thomas, Quackenbush, John, Haibe-Kains, Benjamin
Publicado em 2013

GeneSigDB—a curated database of gene expression signatures

Por Culhane, Aedín C., Schwarzl, Thomas, Sultana, Razvan, Picard, Kermshlise C., Picard, Shaita C., Lu, Tim H., Franklin, Katherine R., French, Simon J., Papenhausen, Gerald, Correll, Mick, Quackenbush, John
Publicado em 2010

RelA-Induced Interferon Response Negatively Regulates Proliferation

Por Kochupurakkal, Bose S., Wang, Zhigang C., Hua, Tony, Culhane, Aedin C., Rodig, Scott J., Rajkovic-Molek, Koraljka, Lazaro, Jean-Bernard, Richardson, Andrea L., Biswas, Debajit K., Iglehart, J. Dirk
Publicado no PLoS One (2015)

Comparative Meta-analysis of Prognostic Gene Signatures for Late-Stage Ovarian Cancer

Por Waldron, Levi, Haibe-Kains, Benjamin, Culhane, Aedín C., Riester, Markus, Ding, Jie, Wang, Xin Victoria, Ahmadifar, Mahnaz, Tyekucheva, Svitlana, Bernau, Christoph, Risch, Thomas, Ganzfried, Benjamin Frederick, Huttenhower, Curtis, Birrer, Michael, Parmigiani, Giovanni
Publicado no J Natl Cancer Inst (2014)

MECP2 Is a Frequently Amplified Oncogene with a Novel Epigenetic Mechanism that Mimics the Role of Activated RAS in Malignancy

Por Neupane, Manish, Clark, Allison P., Landini, Serena, Birkbak, Nicolai J., Eklund, Aron C., Lim, Elgene, Culhane, Aedin C., Barry, William T., Schumacher, Steven E., Beroukhim, Rameen, Szallasi, Zoltan, Vidal, Marc, Hill, David E., Silver, Daniel P.
Publicado no Cancer Discov (2015)