Control of Gene Expression by RNA Binding Protein Action on Alternative Translation Initiation Sites

Por Re, Angela, Waldron, Levi, Quattrone, Alessandro
Publicado no PLoS Comput Biol (2016)

Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues

Por Waldron, Levi, Simpson, Peter, Parmigiani, Giovanni, Huttenhower, Curtis
Publicado em 2012

Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis

Por Zhao, Sihai Dave, Parmigiani, Giovanni, Huttenhower, Curtis, Waldron, Levi
Publicado em 2014

The Doppelgänger Effect: Hidden Duplicates in Databases of Transcriptome Profiles

Por Waldron, Levi, Riester, Markus, Ramos, Marcel, Parmigiani, Giovanni, Birrer, Michael
Publicado no J Natl Cancer Inst (2016)

Two-stage microbial community experimental design

Por Tickle, Timothy L, Segata, Nicola, Waldron, Levi, Weingart, Uri, Huttenhower, Curtis
Publicado em 2013

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights

Por Pasolli, Edoardo, Truong, Duy Tin, Malik, Faizan, Waldron, Levi, Segata, Nicola
Publicado no PLoS Comput Biol (2016)

Metagenomic microbial community profiling using unique clade-specific marker genes

Por Segata, Nicola, Waldron, Levi, Ballarini, Annalisa, Narasimhan, Vagheesh, Jousson, Olivier, Huttenhower, Curtis
Publicado em 2012

Metagenomic biomarker discovery and explanation

Por Segata, Nicola, Izard, Jacques, Waldron, Levi, Gevers, Dirk, Miropolsky, Larisa, Garrett, Wendy S, Huttenhower, Curtis
Publicado em 2011

Optimized application of penalized regression methods to diverse genomic data

Por Waldron, Levi, Pintilie, Melania, Tsao, Ming-Sound, Shepherd, Frances A., Huttenhower, Curtis, Jurisica, Igor
Publicado em 2011

The Murine Caecal MicroRNA Signature Depends on the Presence of the Endogenous Microbiota

Por Singh, Natasha, Shirdel, Elize A., Waldron, Levi, Zhang, Regan-Heng, Jurisica, Igor, Comelli, Elena M.
Publicado em 2011

Cross-study validation for the assessment of prediction algorithms

Por Bernau, Christoph, Riester, Markus, Boulesteix, Anne-Laure, Parmigiani, Giovanni, Huttenhower, Curtis, Waldron, Levi, Trippa, Lorenzo
Publicado em 2014

A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets

Por Koren, Omry, Knights, Dan, Gonzalez, Antonio, Waldron, Levi, Segata, Nicola, Knight, Rob, Huttenhower, Curtis, Ley, Ruth E.
Publicado em 2013

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

Por Segata, Nicola, Haake, Susan Kinder, Mannon, Peter, Lemon, Katherine P, Waldron, Levi, Gevers, Dirk, Huttenhower, Curtis, Izard, Jacques
Publicado em 2012

Racial/Ethnic Disparities in Genomic Sequencing

Por Spratt, Daniel E., Chan, Tiffany, Waldron, Levi, Speers, Corey, Feng, Felix Y., Ogunwobi, Olorunseun O., Osborne, Joseph R.
Publicado no JAMA Oncol (2016)

mRNA transcript quantification in archival samples using multiplexed, color-coded probes

Por Reis, Patricia P, Waldron, Levi, Goswami, Rashmi S, Xu, Wei, Xuan, Yali, Perez-Ordonez, Bayardo, Gullane, Patrick, Irish, Jonathan, Jurisica, Igor, Kamel-Reid, Suzanne
Publicado em 2011

Optimization and analysis of a quantitative real-time PCR-based technique to determine microRNA expression in formalin-fixed paraffin-embedded samples

Por Goswami, Rashmi S, Waldron, Levi, Machado, Jerry, Cervigne, Nilva K, Xu, Wei, Reis, Patricia P, Bailey, Denis J, Jurisica, Igor, Crump, Michael R, Kamel-Reid, Suzanne
Publicado em 2010

Risk Prediction for Late-Stage Ovarian Cancer by Meta-analysis of 1525 Patient Samples

Por Riester, Markus, Wei, Wei, Waldron, Levi, Culhane, Aedin C., Trippa, Lorenzo, Oliva, Esther, Kim, Sung-hoon, Michor, Franziska, Huttenhower, Curtis, Parmigiani, Giovanni, Birrer, Michael J.
Publicado no J Natl Cancer Inst (2014)

Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease

Por Morgan, Xochitl C, Kabakchiev, Boyko, Waldron, Levi, Tyler, Andrea D, Tickle, Timothy L, Milgrom, Raquel, Stempak, Joanne M, Gevers, Dirk, Xavier, Ramnik J, Silverberg, Mark S, Huttenhower, Curtis
Publicado no Genome Biol (2015)

curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome

Por Ganzfried, Benjamin Frederick, Riester, Markus, Haibe-Kains, Benjamin, Risch, Thomas, Tyekucheva, Svitlana, Jazic, Ina, Wang, Xin Victoria, Ahmadifar, Mahnaz, Birrer, Michael J., Parmigiani, Giovanni, Huttenhower, Curtis, Waldron, Levi
Publicado em 2013

A reproducible approach to high-throughput biological data acquisition and integration

Por Börnigen, Daniela, Moon, Yo Sup, Rahnavard, Gholamali, Waldron, Levi, McIver, Lauren, Shafquat, Afrah, Franzosa, Eric A., Miropolsky, Larissa, Sweeney, Christopher, Morgan, Xochitl C., Garrett, Wendy S., Huttenhower, Curtis
Publicado no PeerJ (2015)