On the Road to Strain-Resolved Comparative Metagenomics

by Segata, Nicola
Published in mSystems (2018)

Toward an Efficient Method of Identifying Core Genes for Evolutionary and Functional Microbial Phylogenies

by Segata, Nicola, Huttenhower, Curtis
Published 2011

At the forefront of the sequencing revolution—notes from the RNGS19 conference

by Wuyts, Sander, Segata, Nicola
Published in Genome Biol (2019)

Multiple levels of the unknown in microbiome research

by Thomas, Andrew Maltez, Segata, Nicola
Published in BMC Biol (2019)

Genome Sequence of Pseudomonas aeruginosa PA45, a Highly Virulent Strain Isolated from a Patient with Bloodstream Infection

by Segata, Nicola, Ballarini, Annalisa, Jousson, Olivier
Published 2013

Biodiversity and Functional Genomics in the Human Microbiome

by Morgan, Xochitl C., Segata, Nicola, Huttenhower, Curtis
Published 2012

Simultaneous Quantification of Multiple Bacteria by the BactoChip Microarray Designed to Target Species-Specific Marker Genes

by Ballarini, Annalisa, Segata, Nicola, Huttenhower, Curtis, Jousson, Olivier
Published 2013

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

by Segata, Nicola, Börnigen, Daniela, Morgan, Xochitl C., Huttenhower, Curtis
Published 2013

Genes Encoding Microbial Acyl Coenzyme A Binding Protein/Diazepam-Binding Inhibitor Orthologs Are Rare in the Human Gut Microbiome and Show No Links to Obesity

by Thomas, Andrew Maltez, Asnicar, Francesco, Kroemer, Guido, Segata, Nicola
Published in Appl Environ Microbiol (2021)

MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples

by Zolfo, Moreno, Tett, Adrian, Jousson, Olivier, Donati, Claudio, Segata, Nicola
Published in Nucleic Acids Res (2017)

Two-stage microbial community experimental design

by Tickle, Timothy L, Segata, Nicola, Waldron, Levi, Weingart, Uri, Huttenhower, Curtis
Published 2013

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

by Asnicar, Francesco, Weingart, George, Tickle, Timothy L., Huttenhower, Curtis, Segata, Nicola
Published in PeerJ (2015)

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights

by Pasolli, Edoardo, Truong, Duy Tin, Malik, Faizan, Waldron, Levi, Segata, Nicola
Published in PLoS Comput Biol (2016)

Microbial strain-level population structure and genetic diversity from metagenomes

by Truong, Duy Tin, Tett, Adrian, Pasolli, Edoardo, Huttenhower, Curtis, Segata, Nicola
Published in Genome Res (2017)

Draft Genome Sequence of the Cadmium-Resistant Strain JJU2, Belonging to the Family Hapalosiphonaceae of the Cyanobacteria

by Victoria, Angelo Joshua, Cao, Ernelea, Salmaso, Nico, Segata, Nicola, Donati, Claudio
Published in Microbiol Resour Announc (2018)

Metagenomic microbial community profiling using unique clade-specific marker genes

by Segata, Nicola, Waldron, Levi, Ballarini, Annalisa, Narasimhan, Vagheesh, Jousson, Olivier, Huttenhower, Curtis
Published 2012

Profiling microbial strains in urban environments using metagenomic sequencing data

by Zolfo, Moreno, Asnicar, Francesco, Manghi, Paolo, Pasolli, Edoardo, Tett, Adrian, Segata, Nicola
Published in Biol Direct (2018)

Waldron et al. Reply to “Commentary on the HMP16SData Bioconductor Package”

by Waldron, Levi, Schiffer, Lucas, Azhar, Rimsha, Ramos, Marcel, Geistlinger, Ludwig, Segata, Nicola
Published in Am J Epidemiol (2019)

Large scale genome reconstructions illuminate Wolbachia evolution

by Scholz, Matthias, Albanese, Davide, Tuohy, Kieran, Donati, Claudio, Segata, Nicola, Rota-Stabelli, Omar
Published in Nat Commun (2020)

Metagenomic biomarker discovery and explanation

by Segata, Nicola, Izard, Jacques, Waldron, Levi, Gevers, Dirk, Miropolsky, Larisa, Garrett, Wendy S, Huttenhower, Curtis
Published 2011