Structural principles within the human-virus protein-protein interaction network

par Franzosa, Eric A., Xia, Yu
Publié 2011

Independent Effects of Protein Core Size and Expression on Residue-Level Structure-Evolution Relationships

par Franzosa, Eric A., Xia, Yu
Publié 2012

Toward a three-dimensional view of protein networks between species

par Franzosa, Eric A., Garamszegi, Sara, Xia, Yu
Publié 2012

Quantitative Residue-Level Structure–Evolution Relationships in the Yeast Membrane Proteome

par Franzosa, Eric A., Xue, Ran, Xia, Yu
Publié 2013

Signatures of Pleiotropy, Economy and Convergent Evolution in a Domain-Resolved Map of Human–Virus Protein–Protein Interaction Networks

par Garamszegi, Sara, Franzosa, Eric A., Xia, Yu
Publié 2013

Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate

par Xia, Yu, Franzosa, Eric A., Gerstein, Mark B.
Publié 2009

Protein evolution in yeast transcription factor subnetworks

par Wang, Yong, Franzosa, Eric A., Zhang, Xiang-Sun, Xia, Yu
Publié 2010

A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development

par Hill, Jennifer Hampton, Franzosa, Eric A, Huttenhower, Curtis, Guillemin, Karen
Publié dans eLife (2016)

Strain-level epidemiology of microbial communities and the human microbiome

par Yan, Yan, Nguyen, Long H., Franzosa, Eric A., Huttenhower, Curtis
Publié dans Genome Med (2020)

Statistical approaches for differential expression analysis in metatranscriptomics

par Zhang, Yancong, Thompson, Kelsey N, Huttenhower, Curtis, Franzosa, Eric A
Publié dans Bioinformatics (2021)

Heterozygous Yeast Deletion Collection Screens Reveal Essential Targets of Hsp90

par Franzosa, Eric A., Albanèse, Véronique, Frydman, Judith, Xia, Yu, McClellan, Amie J.
Publié 2011

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED

par Kaminski, James, Gibson, Molly K., Franzosa, Eric A., Segata, Nicola, Dantas, Gautam, Huttenhower, Curtis
Publié dans PLoS Comput Biol (2015)

Experimental design and quantitative analysis of microbial community multiomics

par Mallick, Himel, Ma, Siyuan, Franzosa, Eric A., Vatanen, Tommi, Morgan, Xochitl C., Huttenhower, Curtis
Publié dans Genome Biol (2017)

Identification of natural CRISPR systems and targets in the human microbiome

par Münch, Philipp C., Franzosa, Eric A., Stecher, Bärbel, McHardy, Alice C., Huttenhower, Curtis
Publié dans Cell Host Microbe (2020)

Functional profiling of the gut microbiome in disease-associated inflammation

par Börnigen, Daniela, Morgan, Xochitl C, Franzosa, Eric A, Ren, Boyu, Xavier, Ramnik J, Garrett, Wendy S, Huttenhower, Curtis
Publié 2013

Sequencing and beyond: integrating molecular ‘omics for microbial community profiling

par Franzosa, Eric A., Hsu, Tiffany, Sirota-Madi, Alexandra, Shafquat, Afrah, Abu-Ali, Galeb, Morgan, Xochitl C., Huttenhower, Curtis
Publié dans Nat Rev Microbiol (2015)

Identifying personal microbiomes using metagenomic codes

par Franzosa, Eric A., Huang, Katherine, Meadow, James F., Gevers, Dirk, Lemon, Katherine P., Bohannan, Brendan J. M., Huttenhower, Curtis
Publié dans Proc Natl Acad Sci U S A (2015)

bioBakery: a meta’omic analysis environment

par McIver, Lauren J, Abu-Ali, Galeb, Franzosa, Eric A, Schwager, Randall, Morgan, Xochitl C, Waldron, Levi, Segata, Nicola, Huttenhower, Curtis
Publié dans Bioinformatics (2018)

Host genetic variation and its microbiome interactions within the Human Microbiome Project

par Kolde, Raivo, Franzosa, Eric A., Rahnavard, Gholamali, Hall, Andrew Brantley, Vlamakis, Hera, Stevens, Christine, Daly, Mark J., Xavier, Ramnik J., Huttenhower, Curtis
Publié dans Genome Med (2018)

The classroom microbiome and asthma morbidity in children attending three inner-city schools

par Lai, Peggy S., Kolde, Raivo, Franzosa, Eric A., Gaffin, Jonathan M., Baxi, Sachin N., Sheehan, William J., Gold, Diane R., Gevers, Dirk, Xavier, Ramnik J., Phipatanakul, Wanda
Publié dans J Allergy Clin Immunol (2018)