Structural principles within the human-virus protein-protein interaction network

Por Franzosa, Eric A., Xia, Yu
Publicado em 2011

Independent Effects of Protein Core Size and Expression on Residue-Level Structure-Evolution Relationships

Por Franzosa, Eric A., Xia, Yu
Publicado em 2012

Toward a three-dimensional view of protein networks between species

Por Franzosa, Eric A., Garamszegi, Sara, Xia, Yu
Publicado em 2012

Quantitative Residue-Level Structure–Evolution Relationships in the Yeast Membrane Proteome

Por Franzosa, Eric A., Xue, Ran, Xia, Yu
Publicado em 2013

Signatures of Pleiotropy, Economy and Convergent Evolution in a Domain-Resolved Map of Human–Virus Protein–Protein Interaction Networks

Por Garamszegi, Sara, Franzosa, Eric A., Xia, Yu
Publicado em 2013

Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate

Por Xia, Yu, Franzosa, Eric A., Gerstein, Mark B.
Publicado em 2009

Protein evolution in yeast transcription factor subnetworks

Por Wang, Yong, Franzosa, Eric A., Zhang, Xiang-Sun, Xia, Yu
Publicado em 2010

A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development

Por Hill, Jennifer Hampton, Franzosa, Eric A, Huttenhower, Curtis, Guillemin, Karen
Publicado no eLife (2016)

Strain-level epidemiology of microbial communities and the human microbiome

Por Yan, Yan, Nguyen, Long H., Franzosa, Eric A., Huttenhower, Curtis
Publicado no Genome Med (2020)

Heterozygous Yeast Deletion Collection Screens Reveal Essential Targets of Hsp90

Por Franzosa, Eric A., Albanèse, Véronique, Frydman, Judith, Xia, Yu, McClellan, Amie J.
Publicado em 2011

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED

Por Kaminski, James, Gibson, Molly K., Franzosa, Eric A., Segata, Nicola, Dantas, Gautam, Huttenhower, Curtis
Publicado no PLoS Comput Biol (2015)

Experimental design and quantitative analysis of microbial community multiomics

Por Mallick, Himel, Ma, Siyuan, Franzosa, Eric A., Vatanen, Tommi, Morgan, Xochitl C., Huttenhower, Curtis
Publicado no Genome Biol (2017)

Identification of natural CRISPR systems and targets in the human microbiome

Por Münch, Philipp C., Franzosa, Eric A., Stecher, Bärbel, McHardy, Alice C., Huttenhower, Curtis
Publicado no Cell Host Microbe (2020)

Functional profiling of the gut microbiome in disease-associated inflammation

Por Börnigen, Daniela, Morgan, Xochitl C, Franzosa, Eric A, Ren, Boyu, Xavier, Ramnik J, Garrett, Wendy S, Huttenhower, Curtis
Publicado em 2013

Sequencing and beyond: integrating molecular ‘omics for microbial community profiling

Por Franzosa, Eric A., Hsu, Tiffany, Sirota-Madi, Alexandra, Shafquat, Afrah, Abu-Ali, Galeb, Morgan, Xochitl C., Huttenhower, Curtis
Publicado no Nat Rev Microbiol (2015)

Identifying personal microbiomes using metagenomic codes

Por Franzosa, Eric A., Huang, Katherine, Meadow, James F., Gevers, Dirk, Lemon, Katherine P., Bohannan, Brendan J. M., Huttenhower, Curtis
Publicado no Proc Natl Acad Sci U S A (2015)

bioBakery: a meta’omic analysis environment

Por McIver, Lauren J, Abu-Ali, Galeb, Franzosa, Eric A, Schwager, Randall, Morgan, Xochitl C, Waldron, Levi, Segata, Nicola, Huttenhower, Curtis
Publicado no Bioinformatics (2018)

Host genetic variation and its microbiome interactions within the Human Microbiome Project

Por Kolde, Raivo, Franzosa, Eric A., Rahnavard, Gholamali, Hall, Andrew Brantley, Vlamakis, Hera, Stevens, Christine, Daly, Mark J., Xavier, Ramnik J., Huttenhower, Curtis
Publicado no Genome Med (2018)

The classroom microbiome and asthma morbidity in children attending three inner-city schools

Por Lai, Peggy S., Kolde, Raivo, Franzosa, Eric A., Gaffin, Jonathan M., Baxi, Sachin N., Sheehan, William J., Gold, Diane R., Gevers, Dirk, Xavier, Ramnik J., Phipatanakul, Wanda
Publicado no J Allergy Clin Immunol (2018)

Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences

Por Mallick, Himel, Franzosa, Eric A., Mclver, Lauren J., Banerjee, Soumya, Sirota-Madi, Alexandra, Kostic, Aleksandar D., Clish, Clary B., Vlamakis, Hera, Xavier, Ramnik J., Huttenhower, Curtis
Publicado no Nat Commun (2019)