GOsummaries: an R Package for Visual Functional Annotation of Experimental Data

por Kolde, Raivo, Vilo, Jaak
Publicado en F1000Res (2015)

Robust rank aggregation for gene list integration and meta-analysis

por Kolde, Raivo, Laur, Sven, Adler, Priit, Vilo, Jaak
Publicado 2012

seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data

por Kolde, Raivo, Märtens, Kaspar, Lokk, Kaie, Laur, Sven, Vilo, Jaak
Publicado en Bioinformatics (2016)

Gene Expression-Based Approaches in Differentiation of Metastases and Second Primary Tumour

por Vooder, Tõnu, Välk, Kristjan, Kolde, Raivo, Roosipuu, Retlav, Vilo, Jaak, Metspalu, Andres
Publicado 2010

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods

por Adler, Priit, Kolde, Raivo, Kull, Meelis, Tkachenko, Aleksandr, Peterson, Hedi, Reimand, Jüri, Vilo, Jaak
Publicado 2009

Genome-wide promoter analysis of histone modifications in human monocyte-derived antigen presenting cells

por Tserel, Liina, Kolde, Raivo, Rebane, Ana, Kisand, Kai, Org, Tõnis, Peterson, Hedi, Vilo, Jaak, Peterson, Pärt
Publicado 2010

Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data

por Chen, Yun, Jørgensen, Mette, Kolde, Raivo, Zhao, Xiaobei, Parker, Brian, Valen, Eivind, Wen, Jiayu, Sandelin, Albin
Publicado 2011

Estimating differential expression from multiple indicators

por Ilmjärv, Sten, Hundahl, Christian Ansgar, Reimets, Riin, Niitsoo, Margus, Kolde, Raivo, Vilo, Jaak, Vasar, Eero, Luuk, Hendrik
Publicado 2014

2441. Automated, Rapid Detection of Potential Healthcare-Acquired Infection Clusters Based on Microbiology And Patient Geotemporal Data

por Kolde, Raivo, Loving, Joshua, Sharma, Rohit, Carmona, Juan J, Doty, Alan J, Gross, Brian D, van Aggelen, Helen C
Publicado en Open Forum Infect Dis (2019)

MicroRNA Expression Profiles of Human Blood Monocyte-derived Dendritic Cells and Macrophages Reveal miR-511 as Putative Positive Regulator of Toll-like Receptor 4

por Tserel, Liina, Runnel, Toomas, Kisand, Kai, Pihlap, Maire, Bakhoff, Lairi, Kolde, Raivo, Peterson, Hedi, Vilo, Jaak, Peterson, Pärt, Rebane, Ana
Publicado 2011

Simultaneous Pathway Activity Inference and Gene Expression Analysis Using RNA Sequencing

por O'Connell, Daniel J., Kolde, Raivo, Sooknah, Matthew, Graham, Daniel B., Sundberg, Thomas B., Latorre, Isabel, Mikkelsen, Tarjei S., Xavier, Ramnik J.
Publicado en Cell Syst (2016)

Age-related profiling of DNA methylation in CD8+ T cells reveals changes in immune response and transcriptional regulator genes

por Tserel, Liina, Kolde, Raivo, Limbach, Maia, Tretyakov, Konstantin, Kasela, Silva, Kisand, Kai, Saare, Mario, Vilo, Jaak, Metspalu, Andres, Milani, Lili, Peterson, Pärt
Publicado en Sci Rep (2015)

Host genetic variation and its microbiome interactions within the Human Microbiome Project

por Kolde, Raivo, Franzosa, Eric A., Rahnavard, Gholamali, Hall, Andrew Brantley, Vlamakis, Hera, Stevens, Christine, Daly, Mark J., Xavier, Ramnik J., Huttenhower, Curtis
Publicado en Genome Med (2018)

Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development

por Billon, Nathalie, Kolde, Raivo, Reimand, Jüri, Monteiro, Miguel C, Kull, Meelis, Peterson, Hedi, Tretyakov, Konstantin, Adler, Priit, Wdziekonski, Brigitte, Vilo, Jaak, Dani, Christian
Publicado 2010

DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

por Lokk, Kaie, Modhukur, Vijayachitra, Rajashekar, Balaji, Märtens, Kaspar, Mägi, Reedik, Kolde, Raivo, Koltšina, Marina, Nilsson, Torbjörn K, Vilo, Jaak, Salumets, Andres, Tõnisson, Neeme
Publicado 2014

Erratum to: DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

por Lokk, Kaie, Modhukur, Vijayachitra, Rajashekar, Balaji, Märtens, Kaspar, Mägi, Reedik, Kolde, Raivo, Koltšina, Marina, Nilsson, Torbjörn K., Vilo, Jaak, Salumets, Andres, Tönisson, Neeme
Publicado en Genome Biol (2016)

Methylation Markers of Early-Stage Non-Small Cell Lung Cancer

por Lokk, Kaie, Vooder, Tõnu, Kolde, Raivo, Välk, Kristjan, Võsa, Urmo, Roosipuu, Retlav, Milani, Lili, Fischer, Krista, Koltsina, Marina, Urgard, Egon, Annilo, Tarmo, Metspalu, Andres, Tõnisson, Neeme
Publicado 2012

Correction: Methylation Markers of Early-Stage Non-Small Cell Lung Cancer

por Lokk, Kaie, Vooder, Tõnu, Kolde, Raivo, Välk, Kristjan, Võsa, Urmo, Roosipuu, Retlav, Milani, Lili, Fischer, Krista, Koltsina, Marina, Urgard, Egon, Annilo, Tarmo, Metspalu, Andres, Tõnisson, Neeme
Publicado en PLoS One (2017)

The classroom microbiome and asthma morbidity in children attending three inner-city schools

por Lai, Peggy S., Kolde, Raivo, Franzosa, Eric A., Gaffin, Jonathan M., Baxi, Sachin N., Sheehan, William J., Gold, Diane R., Gevers, Dirk, Xavier, Ramnik J., Phipatanakul, Wanda
Publicado en J Allergy Clin Immunol (2018)

Design Principles of Concentration-Dependent Transcriptome Deviations in Drug-Exposed Differentiating Stem Cells

por Waldmann, Tanja, Rempel, Eugen, Balmer, Nina V., König, André, Kolde, Raivo, Gaspar, John Antonydas, Henry, Margit, Hescheler, Jürgen, Sachinidis, Agapios, Rahnenführer, Jörg, Hengstler, Jan G., Leist, Marcel
Publicado 2014