Mimoza: web-based semantic zooming and navigation in metabolic networks

by Zhukova, Anna, Sherman, David J
Published in BMC Syst Biol (2015)

LibKiSAO: a Java library for Querying KiSAO

by Zhukova, Anna, Adams, Richard, Laibe, Camille, Le Novère, Nicolas
Published 2012

The Role of Phylogenetics as a Tool to Predict the Spread of Resistance

by Zhukova, Anna, Cutino-Moguel, Teresa, Gascuel, Olivier, Pillay, Deenan
Published in J Infect Dis (2017)

A Fast Likelihood Method to Reconstruct and Visualize Ancestral Scenarios

by Ishikawa, Sohta A, Zhukova, Anna, Iwasaki, Wataru, Gascuel, Olivier
Published in Mol Biol Evol (2019)

Modeling sample variables with an Experimental Factor Ontology

by Malone, James, Holloway, Ele, Adamusiak, Tomasz, Kapushesky, Misha, Zheng, Jie, Kolesnikov, Nikolay, Zhukova, Anna, Brazma, Alvis, Parkinson, Helen
Published 2010

Differing impacts of global and regional responses on SARS-CoV-2 transmission cluster dynamics

by Magalis, Brittany Rife, Ramirez-Mata, Andrea, Zhukova, Anna, Mavian, Carla, Marini, Simone, Lemoine, Frederic, Prosperi, Mattia, Gascuel, Olivier, Salemi, Marco
Published in bioRxiv (2020)

Genome-Wide Transcriptional Start Site Mapping and sRNA Identification in the Pathogen Leptospira interrogans

by Zhukova, Anna, Fernandes, Luis Guilherme, Hugon, Perrine, Pappas, Christopher J., Sismeiro, Odile, Coppée, Jean-Yves, Becavin, Christophe, Malabat, Christophe, Eshghi, Azad, Zhang, Jun-Jie, Yang, Frank X., Picardeau, Mathieu
Published in Front Cell Infect Microbiol (2017)

The seventh pandemic of cholera in Europe revisited by microbial genomics

by Oprea, Mihaela, Njamkepo, Elisabeth, Cristea, Daniela, Zhukova, Anna, Clark, Clifford G., Kravetz, Anatoly N., Monakhova, Elena, Ciontea, Adriana S., Cojocaru, Radu, Rauzier, Jean, Damian, Maria, Gascuel, Olivier, Quilici, Marie-Laure, Weill, François-Xavier
Published in Nat Commun (2020)

Controlled vocabularies and semantics in systems biology

by Courtot, Mélanie, Juty, Nick, Knüpfer, Christian, Waltemath, Dagmar, Zhukova, Anna, Dräger, Andreas, Dumontier, Michel, Finney, Andrew, Golebiewski, Martin, Hastings, Janna, Hoops, Stefan, Keating, Sarah, Kell, Douglas B, Kerrien, Samuel, Lawson, James, Lister, Allyson, Lu, James, Machne, Rainer, Mendes, Pedro, Pocock, Matthew, Rodriguez, Nicolas, Villeger, Alice, Wilkinson, Darren J, Wimalaratne, Sarala, Laibe, Camille, Hucka, Michael, Le Novère, Nicolas
Published 2011

Maternal and neonatal outcomes related to Zika virus in pregnant women in Southern Vietnam: An epidemiological and virological prospective analysis

by Grant, Rebecca, Nguyen, Thao Thi Thanh, Dao, Manh Huy, Pham, Hang Thi Thu, Piorkowski, Géraldine, Pham, Tai Doan Tan, Cao, Thang Minh, Huynh, Loan Thi Kim, Nguyen, Quan Hoang, Vien, Linh Dang Khanh, Lemoine, Frédéric, Zhukova, Anna, Hoang, Dao Thi Nhu, Nguyen, Hung Thanh, Nguyen, Nhu Tuan, Le, Lien Bich, Ngo, Minh Nguyen Quang, Tran, Thai Chau, Le, Nhan Nguyen Thanh, Nguyen, Minh Ngoc, Pham, Hai Thanh, Hoang, Tuyet Thi Diem, Dang, Thach Van, Vu, Anh Thi, Nguyen, Quyen Ngoc Truc, de Lamballerie, Xavier, Pham, Quang Duy, Luong, Quang Chan, Fontanet, Arnaud
Published in Lancet Reg Health West Pac (2021)

Toward community standards and software for whole-cell modeling

by Waltemath, Dagmar, Karr, Jonathan R., Bergmann, Frank T., Chelliah, Vijayalakshmi, Hucka, Michael, Krantz, Marcus, Liebermeister, Wolfram, Mendes, Pedro, Myers, Chris J., Pir, Pinar, Alaybeyoglu, Begum, Aranganathan, Naveen K, Baghalian, Kambiz, Bittig, Arne T., Pinto Burke, Paulo E., Cantarelli, Matteo, Chew, Yin Hoon, Costa, Rafael S., Cursons, Joseph, Czauderna, Tobias, Goldberg, Arthur P., Gómez, Harold F., Hahn, Jens, Hameri, Tuure, Hernandez Gardiol, Daniel F., Kazakiewicz, Denis, Kiselev, Ilya, Knight-Schrijver, Vincent, Knüpfer, Christian, König, Matthias, Lee, Daewon, Lloret-Villas, Audald, Mandrik, Nikita, Medley, J. Kyle, Moreau, Bertrand, Naderi-Meshkin, Hojjat, Palaniappan, Sucheendra K., Priego-Espinosa, Daniel, Scharm, Martin, Sharma, Mahesh, Smallbone, Kieran, Stanford, Natalie J., Song, Je-Hoon, Theile, Tom, Tokic, Milenko, Tomar, Namrata, Touré, Vasundra, Uhlendorf, Jannis, Varusai, Thawfeek M, Watanabe, Leandro H., Wendland, Florian, Wolfien, Markus, Yurkovich, James T., Zhu, Yan, Zardilis, Argyris, Zhukova, Anna, Schreiber, Falk
Published in IEEE Trans Biomed Eng (2016)