The Logic of Surveillance Guidelines: An Analysis of Vaccine Adverse Event Reports from an Ontological Perspective

par Courtot, Mélanie, Brinkman, Ryan R., Ruttenberg, Alan
Publié 2014

BioModels.net Web Services, a free and integrated toolkit for computational modelling software

par Li, Chen, Courtot, Mélanie, Le Novère, Nicolas, Laibe, Camille
Publié 2010

Dead simple OWL design patterns

par Osumi-Sutherland, David, Courtot, Melanie, Balhoff, James P., Mungall, Christopher
Publié dans J Biomed Semantics (2017)

OntoFox: web-based support for ontology reuse

par Courtot Mélanie, Xiang Zuoshuang, Brinkman Ryan R, Ruttenberg Alan, He Yongqun
Publié 2010-06-01

OntoFox: web-based support for ontology reuse

par Xiang, Zuoshuang, Courtot, Mélanie, Brinkman, Ryan R, Ruttenberg, Alan, He, Yongqun
Publié 2010

Using OWL reasoning to support the generation of novel gene sets for enrichment analysis

par Osumi-Sutherland, David J., Ponta, Enrico, Courtot, Melanie, Parkinson, Helen, Badi, Laura
Publié dans J Biomed Semantics (2018)

Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration

par Ong, Edison, Xiang, Zuoshuang, Zhao, Bin, Liu, Yue, Lin, Yu, Zheng, Jie, Mungall, Chris, Courtot, Mélanie, Ruttenberg, Alan, He, Yongqun
Publié dans Nucleic Acids Res (2017)

BioSamples database: an updated sample metadata hub

par Courtot, Mélanie, Cherubin, Luca, Faulconbridge, Adam, Vaughan, Daniel, Green, Matthew, Richardson, David, Harrison, Peter, Whetzel, Patricia L, Parkinson, Helen, Burdett, Tony
Publié dans Nucleic Acids Res (2019)

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems

par Le Novère, Nicolas, Bornstein, Benjamin, Broicher, Alexander, Courtot, Mélanie, Donizelli, Marco, Dharuri, Harish, Li, Lu, Sauro, Herbert, Schilstra, Maria, Shapiro, Bruce, Snoep, Jacky L., Hucka, Michael
Publié 2006

From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF

par Kılıç, Sefa, Sagitova, Dinara M., Wolfish, Shoshannah, Bely, Benoit, Courtot, Mélanie, Ciufo, Stacy, Tatusova, Tatiana, O’Donovan, Claire, Chibucos, Marcus C., Martin, Maria J., Erill, Ivan
Publié dans Database (Oxford) (2016)

flowCL: ontology-based cell population labelling in flow cytometry

par Courtot, Mélanie, Meskas, Justin, Diehl, Alexander D., Droumeva, Radina, Gottardo, Raphael, Jalali, Adrin, Taghiyar, Mohammad Jafar, Maecker, Holden T., McCoy, J. Philip, Ruttenberg, Alan, Scheuermann, Richard H., Brinkman, Ryan R.
Publié dans Bioinformatics (2015)

Modeling biomedical experimental processes with OBI

par Brinkman, Ryan R, Courtot, Mélanie, Derom, Dirk, Fostel, Jennifer M, He, Yongqun, Lord, Phillip, Malone, James, Parkinson, Helen, Peters, Bjoern, Rocca-Serra, Philippe, Ruttenberg, Alan, Sansone, Susanna-Assunta, Soldatova, Larisa N, Stoeckert, Christian J, Turner, Jessica A, Zheng, Jie
Publié 2010

Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149

par Tkavc, Rok, Matrosova, Vera Y., Grichenko, Olga E., Gostinčar, Cene, Volpe, Robert P., Klimenkova, Polina, Gaidamakova, Elena K., Zhou, Carol E., Stewart, Benjamin J., Lyman, Mathew G., Malfatti, Stephanie A., Rubinfeld, Bonnee, Courtot, Melanie, Singh, Jatinder, Dalgard, Clifton L., Hamilton, Theron, Frey, Kenneth G., Gunde-Cimerman, Nina, Dugan, Lawrence, Daly, Michael J.
Publié dans Front Microbiol (2018)

Controlled vocabularies and semantics in systems biology

par Courtot, Mélanie, Juty, Nick, Knüpfer, Christian, Waltemath, Dagmar, Zhukova, Anna, Dräger, Andreas, Dumontier, Michel, Finney, Andrew, Golebiewski, Martin, Hastings, Janna, Hoops, Stefan, Keating, Sarah, Kell, Douglas B, Kerrien, Samuel, Lawson, James, Lister, Allyson, Lu, James, Machne, Rainer, Mendes, Pedro, Pocock, Matthew, Rodriguez, Nicolas, Villeger, Alice, Wilkinson, Darren J, Wimalaratne, Sarala, Laibe, Camille, Hucka, Michael, Le Novère, Nicolas
Publié 2011

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

par Jia, Baofeng, Raphenya, Amogelang R., Alcock, Brian, Waglechner, Nicholas, Guo, Peiyao, Tsang, Kara K., Lago, Briony A., Dave, Biren M., Pereira, Sheldon, Sharma, Arjun N., Doshi, Sachin, Courtot, Mélanie, Lo, Raymond, Williams, Laura E., Frye, Jonathan G., Elsayegh, Tariq, Sardar, Daim, Westman, Erin L., Pawlowski, Andrew C., Johnson, Timothy A., Brinkman, Fiona S.L., Wright, Gerard D., McArthur, Andrew G.
Publié dans Nucleic Acids Res (2017)

The European Nucleotide Archive in 2020

par Harrison, Peter W, Ahamed, Alisha, Aslam, Raheela, Alako, Blaise T F, Burgin, Josephine, Buso, Nicola, Courtot, Mélanie, Fan, Jun, Gupta, Dipayan, Haseeb, Muhammad, Holt, Sam, Ibrahim, Talal, Ivanov, Eugene, Jayathilaka, Suran, Balavenkataraman Kadhirvelu, Vishnukumar, Kumar, Manish, Lopez, Rodrigo, Kay, Simon, Leinonen, Rasko, Liu, Xin, O’Cathail, Colman, Pakseresht, Amir, Park, Youngmi, Pesant, Stephane, Rahman, Nadim, Rajan, Jeena, Sokolov, Alexey, Vijayaraja, Senthilnathan, Waheed, Zahra, Zyoud, Ahmad, Burdett, Tony, Cochrane, Guy
Publié dans Nucleic Acids Res (2020)

The Ontology for Biomedical Investigations

par Bandrowski, Anita, Brinkman, Ryan, Brochhausen, Mathias, Brush, Matthew H., Bug, Bill, Chibucos, Marcus C., Clancy, Kevin, Courtot, Mélanie, Derom, Dirk, Dumontier, Michel, Fan, Liju, Fostel, Jennifer, Fragoso, Gilberto, Gibson, Frank, Gonzalez-Beltran, Alejandra, Haendel, Melissa A., He, Yongqun, Heiskanen, Mervi, Hernandez-Boussard, Tina, Jensen, Mark, Lin, Yu, Lister, Allyson L., Lord, Phillip, Malone, James, Manduchi, Elisabetta, McGee, Monnie, Morrison, Norman, Overton, James A., Parkinson, Helen, Peters, Bjoern, Rocca-Serra, Philippe, Ruttenberg, Alan, Sansone, Susanna-Assunta, Scheuermann, Richard H., Schober, Daniel, Smith, Barry, Soldatova, Larisa N., Stoeckert, Christian J., Taylor, Chris F., Torniai, Carlo, Turner, Jessica A., Vita, Randi, Whetzel, Patricia L., Zheng, Jie
Publié dans PLoS One (2016)

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

par McMurry, Julie A., Juty, Nick, Blomberg, Niklas, Burdett, Tony, Conlin, Tom, Conte, Nathalie, Courtot, Mélanie, Deck, John, Dumontier, Michel, Fellows, Donal K., Gonzalez-Beltran, Alejandra, Gormanns, Philipp, Grethe, Jeffrey, Hastings, Janna, Hériché, Jean-Karim, Hermjakob, Henning, Ison, Jon C., Jimenez, Rafael C., Jupp, Simon, Kunze, John, Laibe, Camille, Le Novère, Nicolas, Malone, James, Martin, Maria Jesus, McEntyre, Johanna R., Morris, Chris, Muilu, Juha, Müller, Wolfgang, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Sariyar, Murat, Snoep, Jacky L., Soiland-Reyes, Stian, Stanford, Natalie J., Swainston, Neil, Washington, Nicole, Williams, Alan R., Wimalaratne, Sarala M., Winfree, Lilly M., Wolstencroft, Katherine, Goble, Carole, Mungall, Christopher J., Haendel, Melissa A., Parkinson, Helen
Publié dans PLoS Biol (2017)

Finding Our Way through Phenotypes

par Deans, Andrew R., Lewis, Suzanna E., Huala, Eva, Anzaldo, Salvatore S., Ashburner, Michael, Balhoff, James P., Blackburn, David C., Blake, Judith A., Burleigh, J. Gordon, Chanet, Bruno, Cooper, Laurel D., Courtot, Mélanie, Csösz, Sándor, Cui, Hong, Dahdul, Wasila, Das, Sandip, Dececchi, T. Alexander, Dettai, Agnes, Diogo, Rui, Druzinsky, Robert E., Dumontier, Michel, Franz, Nico M., Friedrich, Frank, Gkoutos, George V., Haendel, Melissa, Harmon, Luke J., Hayamizu, Terry F., He, Yongqun, Hines, Heather M., Ibrahim, Nizar, Jackson, Laura M., Jaiswal, Pankaj, James-Zorn, Christina, Köhler, Sebastian, Lecointre, Guillaume, Lapp, Hilmar, Lawrence, Carolyn J., Le Novère, Nicolas, Lundberg, John G., Macklin, James, Mast, Austin R., Midford, Peter E., Mikó, István, Mungall, Christopher J., Oellrich, Anika, Osumi-Sutherland, David, Parkinson, Helen, Ramírez, Martín J., Richter, Stefan, Robinson, Peter N., Ruttenberg, Alan, Schulz, Katja S., Segerdell, Erik, Seltmann, Katja C., Sharkey, Michael J., Smith, Aaron D., Smith, Barry, Specht, Chelsea D., Squires, R. Burke, Thacker, Robert W., Thessen, Anne, Fernandez-Triana, Jose, Vihinen, Mauno, Vize, Peter D., Vogt, Lars, Wall, Christine E., Walls, Ramona L., Westerfeld, Monte, Wharton, Robert A., Wirkner, Christian S., Woolley, James B., Yoder, Matthew J., Zorn, Aaron M., Mabee, Paula
Publié dans PLoS Biol (2015)