The Logic of Surveillance Guidelines: An Analysis of Vaccine Adverse Event Reports from an Ontological Perspective

od Courtot, Mélanie, Brinkman, Ryan R., Ruttenberg, Alan
Izdano 2014

BioModels.net Web Services, a free and integrated toolkit for computational modelling software

od Li, Chen, Courtot, Mélanie, Le Novère, Nicolas, Laibe, Camille
Izdano 2010

Dead simple OWL design patterns

od Osumi-Sutherland, David, Courtot, Melanie, Balhoff, James P., Mungall, Christopher
izdano v J Biomed Semantics (2017)

OntoFox: web-based support for ontology reuse

od Courtot Mélanie, Xiang Zuoshuang, Brinkman Ryan R, Ruttenberg Alan, He Yongqun
Izdano 2010-06-01

OntoFox: web-based support for ontology reuse

od Xiang, Zuoshuang, Courtot, Mélanie, Brinkman, Ryan R, Ruttenberg, Alan, He, Yongqun
Izdano 2010

Using OWL reasoning to support the generation of novel gene sets for enrichment analysis

od Osumi-Sutherland, David J., Ponta, Enrico, Courtot, Melanie, Parkinson, Helen, Badi, Laura
izdano v J Biomed Semantics (2018)

Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration

od Ong, Edison, Xiang, Zuoshuang, Zhao, Bin, Liu, Yue, Lin, Yu, Zheng, Jie, Mungall, Chris, Courtot, Mélanie, Ruttenberg, Alan, He, Yongqun
izdano v Nucleic Acids Res (2017)

BioSamples database: an updated sample metadata hub

od Courtot, Mélanie, Cherubin, Luca, Faulconbridge, Adam, Vaughan, Daniel, Green, Matthew, Richardson, David, Harrison, Peter, Whetzel, Patricia L, Parkinson, Helen, Burdett, Tony
izdano v Nucleic Acids Res (2019)

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems

od Le Novère, Nicolas, Bornstein, Benjamin, Broicher, Alexander, Courtot, Mélanie, Donizelli, Marco, Dharuri, Harish, Li, Lu, Sauro, Herbert, Schilstra, Maria, Shapiro, Bruce, Snoep, Jacky L., Hucka, Michael
Izdano 2006

From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF

od Kılıç, Sefa, Sagitova, Dinara M., Wolfish, Shoshannah, Bely, Benoit, Courtot, Mélanie, Ciufo, Stacy, Tatusova, Tatiana, O’Donovan, Claire, Chibucos, Marcus C., Martin, Maria J., Erill, Ivan
izdano v Database (Oxford) (2016)

flowCL: ontology-based cell population labelling in flow cytometry

od Courtot, Mélanie, Meskas, Justin, Diehl, Alexander D., Droumeva, Radina, Gottardo, Raphael, Jalali, Adrin, Taghiyar, Mohammad Jafar, Maecker, Holden T., McCoy, J. Philip, Ruttenberg, Alan, Scheuermann, Richard H., Brinkman, Ryan R.
izdano v Bioinformatics (2015)

Modeling biomedical experimental processes with OBI

od Brinkman, Ryan R, Courtot, Mélanie, Derom, Dirk, Fostel, Jennifer M, He, Yongqun, Lord, Phillip, Malone, James, Parkinson, Helen, Peters, Bjoern, Rocca-Serra, Philippe, Ruttenberg, Alan, Sansone, Susanna-Assunta, Soldatova, Larisa N, Stoeckert, Christian J, Turner, Jessica A, Zheng, Jie
Izdano 2010

Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149

od Tkavc, Rok, Matrosova, Vera Y., Grichenko, Olga E., Gostinčar, Cene, Volpe, Robert P., Klimenkova, Polina, Gaidamakova, Elena K., Zhou, Carol E., Stewart, Benjamin J., Lyman, Mathew G., Malfatti, Stephanie A., Rubinfeld, Bonnee, Courtot, Melanie, Singh, Jatinder, Dalgard, Clifton L., Hamilton, Theron, Frey, Kenneth G., Gunde-Cimerman, Nina, Dugan, Lawrence, Daly, Michael J.
izdano v Front Microbiol (2018)

Controlled vocabularies and semantics in systems biology

od Courtot, Mélanie, Juty, Nick, Knüpfer, Christian, Waltemath, Dagmar, Zhukova, Anna, Dräger, Andreas, Dumontier, Michel, Finney, Andrew, Golebiewski, Martin, Hastings, Janna, Hoops, Stefan, Keating, Sarah, Kell, Douglas B, Kerrien, Samuel, Lawson, James, Lister, Allyson, Lu, James, Machne, Rainer, Mendes, Pedro, Pocock, Matthew, Rodriguez, Nicolas, Villeger, Alice, Wilkinson, Darren J, Wimalaratne, Sarala, Laibe, Camille, Hucka, Michael, Le Novère, Nicolas
Izdano 2011

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

od Jia, Baofeng, Raphenya, Amogelang R., Alcock, Brian, Waglechner, Nicholas, Guo, Peiyao, Tsang, Kara K., Lago, Briony A., Dave, Biren M., Pereira, Sheldon, Sharma, Arjun N., Doshi, Sachin, Courtot, Mélanie, Lo, Raymond, Williams, Laura E., Frye, Jonathan G., Elsayegh, Tariq, Sardar, Daim, Westman, Erin L., Pawlowski, Andrew C., Johnson, Timothy A., Brinkman, Fiona S.L., Wright, Gerard D., McArthur, Andrew G.
izdano v Nucleic Acids Res (2017)

The European Nucleotide Archive in 2020

od Harrison, Peter W, Ahamed, Alisha, Aslam, Raheela, Alako, Blaise T F, Burgin, Josephine, Buso, Nicola, Courtot, Mélanie, Fan, Jun, Gupta, Dipayan, Haseeb, Muhammad, Holt, Sam, Ibrahim, Talal, Ivanov, Eugene, Jayathilaka, Suran, Balavenkataraman Kadhirvelu, Vishnukumar, Kumar, Manish, Lopez, Rodrigo, Kay, Simon, Leinonen, Rasko, Liu, Xin, O’Cathail, Colman, Pakseresht, Amir, Park, Youngmi, Pesant, Stephane, Rahman, Nadim, Rajan, Jeena, Sokolov, Alexey, Vijayaraja, Senthilnathan, Waheed, Zahra, Zyoud, Ahmad, Burdett, Tony, Cochrane, Guy
izdano v Nucleic Acids Res (2020)

The Ontology for Biomedical Investigations

od Bandrowski, Anita, Brinkman, Ryan, Brochhausen, Mathias, Brush, Matthew H., Bug, Bill, Chibucos, Marcus C., Clancy, Kevin, Courtot, Mélanie, Derom, Dirk, Dumontier, Michel, Fan, Liju, Fostel, Jennifer, Fragoso, Gilberto, Gibson, Frank, Gonzalez-Beltran, Alejandra, Haendel, Melissa A., He, Yongqun, Heiskanen, Mervi, Hernandez-Boussard, Tina, Jensen, Mark, Lin, Yu, Lister, Allyson L., Lord, Phillip, Malone, James, Manduchi, Elisabetta, McGee, Monnie, Morrison, Norman, Overton, James A., Parkinson, Helen, Peters, Bjoern, Rocca-Serra, Philippe, Ruttenberg, Alan, Sansone, Susanna-Assunta, Scheuermann, Richard H., Schober, Daniel, Smith, Barry, Soldatova, Larisa N., Stoeckert, Christian J., Taylor, Chris F., Torniai, Carlo, Turner, Jessica A., Vita, Randi, Whetzel, Patricia L., Zheng, Jie
izdano v PLoS One (2016)

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

od McMurry, Julie A., Juty, Nick, Blomberg, Niklas, Burdett, Tony, Conlin, Tom, Conte, Nathalie, Courtot, Mélanie, Deck, John, Dumontier, Michel, Fellows, Donal K., Gonzalez-Beltran, Alejandra, Gormanns, Philipp, Grethe, Jeffrey, Hastings, Janna, Hériché, Jean-Karim, Hermjakob, Henning, Ison, Jon C., Jimenez, Rafael C., Jupp, Simon, Kunze, John, Laibe, Camille, Le Novère, Nicolas, Malone, James, Martin, Maria Jesus, McEntyre, Johanna R., Morris, Chris, Muilu, Juha, Müller, Wolfgang, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Sariyar, Murat, Snoep, Jacky L., Soiland-Reyes, Stian, Stanford, Natalie J., Swainston, Neil, Washington, Nicole, Williams, Alan R., Wimalaratne, Sarala M., Winfree, Lilly M., Wolstencroft, Katherine, Goble, Carole, Mungall, Christopher J., Haendel, Melissa A., Parkinson, Helen
izdano v PLoS Biol (2017)

Finding Our Way through Phenotypes

od Deans, Andrew R., Lewis, Suzanna E., Huala, Eva, Anzaldo, Salvatore S., Ashburner, Michael, Balhoff, James P., Blackburn, David C., Blake, Judith A., Burleigh, J. Gordon, Chanet, Bruno, Cooper, Laurel D., Courtot, Mélanie, Csösz, Sándor, Cui, Hong, Dahdul, Wasila, Das, Sandip, Dececchi, T. Alexander, Dettai, Agnes, Diogo, Rui, Druzinsky, Robert E., Dumontier, Michel, Franz, Nico M., Friedrich, Frank, Gkoutos, George V., Haendel, Melissa, Harmon, Luke J., Hayamizu, Terry F., He, Yongqun, Hines, Heather M., Ibrahim, Nizar, Jackson, Laura M., Jaiswal, Pankaj, James-Zorn, Christina, Köhler, Sebastian, Lecointre, Guillaume, Lapp, Hilmar, Lawrence, Carolyn J., Le Novère, Nicolas, Lundberg, John G., Macklin, James, Mast, Austin R., Midford, Peter E., Mikó, István, Mungall, Christopher J., Oellrich, Anika, Osumi-Sutherland, David, Parkinson, Helen, Ramírez, Martín J., Richter, Stefan, Robinson, Peter N., Ruttenberg, Alan, Schulz, Katja S., Segerdell, Erik, Seltmann, Katja C., Sharkey, Michael J., Smith, Aaron D., Smith, Barry, Specht, Chelsea D., Squires, R. Burke, Thacker, Robert W., Thessen, Anne, Fernandez-Triana, Jose, Vihinen, Mauno, Vize, Peter D., Vogt, Lars, Wall, Christine E., Walls, Ramona L., Westerfeld, Monte, Wharton, Robert A., Wirkner, Christian S., Woolley, James B., Yoder, Matthew J., Zorn, Aaron M., Mabee, Paula
izdano v PLoS Biol (2015)