Bayesian parameter inference for stochastic biochemical network models using particle Markov chain Monte Carlo

Por Golightly, Andrew, Wilkinson, Darren J.
Publicado em 2011

A network epidemic model for online community commissioning data

Por Lee, Clement, Garbett, Andrew, Wilkinson, Darren J.
Publicado no Stat Comput (2017)

Fast Bayesian parameter estimation for stochastic logistic growth models

Por Heydari, Jonathan, Lawless, Conor, Lydall, David A., Wilkinson, Darren J.
Publicado em 2014

Bayesian hierarchical modelling for inferring genetic interactions in yeast

Por Heydari, Jonathan, Lawless, Conor, Lydall, David A., Wilkinson, Darren J.
Publicado no J R Stat Soc Ser C Appl Stat (2015)

Analysing time course microarray data using Bioconductor: a case study using yeast2 Affymetrix arrays

Por Gillespie, Colin S, Lei, Guiyuan, Boys, Richard J, Greenall, Amanda, Wilkinson, Darren J
Publicado em 2010

A whole-body mathematical model of cholesterol metabolism and its age-associated dysregulation

Por Mc Auley, Mark T, Wilkinson, Darren J, Jones, Janette JL, Kirkwood, Thomas BL
Publicado em 2012

Colonyzer: automated quantification of micro-organism growth characteristics on solid agar

Por Lawless, Conor, Wilkinson, Darren J, Young, Alexander, Addinall, Stephen G, Lydall, David A
Publicado em 2010

Pentose Phosphate Pathway Function Affects Tolerance to the G-Quadruplex Binder TMPyP4

Por Andrew, Elizabeth J., Merchan, Stephanie, Lawless, Conor, Banks, A. Peter, Wilkinson, Darren J., Lydall, David
Publicado em 2013

Bayesian integration of networks without gold standards

Por Weile, Jochen, James, Katherine, Hallinan, Jennifer, Cockell, Simon J., Lord, Phillip, Wipat, Anil, Wilkinson, Darren J.
Publicado em 2012

Quantitative Fitness Analysis Identifies exo1∆ and Other Suppressors or Enhancers of Telomere Defects in Schizosaccharomyces pombe

Por Narayanan, Siddharth, Dubarry, Marion, Lawless, Conor, Banks, A. Peter, Wilkinson, Darren J., Whitehall, Simon K., Lydall, David
Publicado no PLoS One (2015)

A mathematical model of aging-related and cortisol induced hippocampal dysfunction

Por McAuley, Mark T, Kenny, Rose Anne, Kirkwood, Thomas BL, Wilkinson, Darren J, Jones, Janette JL, Miller, Veronica M
Publicado em 2009

A Bayesian approach to modelling the impact of hydrodynamic shear stress on biofilm deformation

Por Oyebamiji, Oluwole K., Wilkinson, Darren J., Jayathilake, Pahala Gedara, Rushton, Steve P., Bridgens, Ben, Li, Bowen, Zuliani, Paolo
Publicado no PLoS One (2018)

Genome-Wide Analysis to Identify Pathways Affecting Telomere-Initiated Senescence in Budding Yeast

Por Chang, Hsin-Yu, Lawless, Conor, Addinall, Stephen G., Oexle, Sarah, Taschuk, Morgan, Wipat, Anil, Wilkinson, Darren J., Lydall, David
Publicado em 2011

A genome wide analysis of the response to uncapped telomeres in budding yeast reveals a novel role for the NAD(+ )biosynthetic gene BNA2 in chromosome end protection

Por Greenall, Amanda, Lei, Guiyuan, Swan, Daniel C, James, Katherine, Wang, Liming, Peters, Heiko, Wipat, Anil, Wilkinson, Darren J, Lydall, David
Publicado em 2008

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

Por Hucka, Michael, Bergmann, Frank T., Hoops, Stefan, Keating, Sarah M., Sahle, Sven, Schaff, James C., Smith, Lucian P., Wilkinson, Darren J.
Publicado no J Integr Bioinform (2015)

Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1

Por Smith, Lucian P., Moodie, Stuart L., Bergmann, Frank T., Gillespie, Colin, Keating, Sarah M., König, Matthias, Myers, Chris J., Swat, Maciek J., Wilkinson, Darren J., Hucka, Michael
Publicado no J Integr Bioinform (2020)

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

Por Hucka, Michael, Bergmann, Frank T., Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., Le Novére, Nicolas, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Smith, Lucian P., Waltemath, Dagmar, Wilkinson, Darren J.
Publicado no J Integr Bioinform (2015)

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core

Por Hucka, Michael, Bergmann, Frank T., Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., Le Novère, Nicolas, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Smith, Lucian P., Waltemath, Dagmar, Wilkinson, Darren J.
Publicado no J Integr Bioinform (2018)

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

Por Hucka, Michael, Bergmann, Frank T., Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., Le Novère, Nicolas, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Smith, Lucian P., Waltemath, Dagmar, Wilkinson, Darren J.
Publicado no J Integr Bioinform (2018)

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2

Por Hucka, Michael, Bergmann, Frank T., Chaouiya, Claudine, Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., König, Matthias, Novère, Nicolas Le, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Sheriff, Rahuman, Smith, Lucian P., Waltemath, Dagmar, Wilkinson, Darren J., Zhang, Fengkai
Publicado no J Integr Bioinform (2019)