Federated ontology-based queries over cancer data

di González-Beltrán, Alejandra, Tagger, Ben, Finkelstein, Anthony
Pubblicazione 2012

Guidelines for information about therapy experiments: a proposal on best practice for recording experimental data on cancer therapy

di González-Beltrán, Alejandra N, Yong, May Y, Dancey, Gairin, Begent, Richard
Pubblicazione 2012

linkedISA: semantic representation of ISA-Tab experimental metadata

di González-Beltrán, Alejandra, Maguire, Eamonn, Sansone, Susanna-Assunta, Rocca-Serra, Philippe
Pubblicato in BMC Bioinformatics (2014)

The Data Tags Suite (DATS) model for discovering data access and use requirements

di Alter, George, Gonzalez-Beltran, Alejandra, Ohno-Machado, Lucila, Rocca-Serra, Philippe
Pubblicato in Gigascience (2020)

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again

di González-Beltrán, Alejandra, Neumann, Steffen, Maguire, Eamonn, Sansone, Susanna-Assunta, Rocca-Serra, Philippe
Pubblicazione 2014

Ten simple rules for making a vocabulary FAIR

di Cox, Simon J. D., Gonzalez-Beltran, Alejandra N., Magagna, Barbara, Marinescu, Maria-Cristina
Pubblicato in PLoS Comput Biol (2021)

OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets

di Maguire, Eamonn, González-Beltrán, Alejandra, Whetzel, Patricia L., Sansone, Susanna-Assunta, Rocca-Serra, Philippe
Pubblicazione 2013

Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach

di Rocca-Serra, Philippe, Walls, Ramona, Parnell, Jacob, Gallery, Rachel, Zheng, Jie, Sansone, Susanna-Assunta, Gonzalez-Beltran, Alejandra
Pubblicato in Database (Oxford) (2015)

BioSharing: curated and crowd-sourced metadata standards, databases and data policies in the life sciences

di McQuilton, Peter, Gonzalez-Beltran, Alejandra, Rocca-Serra, Philippe, Thurston, Milo, Lister, Allyson, Maguire, Eamonn, Sansone, Susanna-Assunta
Pubblicato in Database (Oxford) (2016)

FAIRsharing as a community approach to standards, repositories and policies

di Sansone, Susanna-Assunta, McQuilton, Peter, Rocca-Serra, Philippe, Gonzalez-Beltran, Alejandra, Izzo, Massimiliano, Lister, Allyson L., Thurston, Milo
Pubblicato in Nat Biotechnol (2019)

Data discovery with DATS: exemplar adoptions and lessons learned

di Gonzalez-Beltran, Alejandra N, Campbell, John, Dunn, Patrick, Guijarro, Diana, Ionescu, Sanda, Kim, Hyeoneui, Lyle, Jared, Wiser, Jeffrey, Sansone, Susanna-Assunta, Rocca-Serra, Philippe
Pubblicato in J Am Med Inform Assoc (2017)

The MetaboLights repository: curation challenges in metabolomics

di Salek, Reza M., Haug, Kenneth, Conesa, Pablo, Hastings, Janna, Williams, Mark, Mahendraker, Tejasvi, Maguire, Eamonn, González-Beltrán, Alejandra N., Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Steinbeck, Christoph
Pubblicazione 2013

Semantic concept schema of the linear mixed model of experimental observations

di Ćwiek-Kupczyńska, Hanna, Filipiak, Katarzyna, Markiewicz, Augustyn, Rocca-Serra, Philippe, Gonzalez-Beltran, Alejandra N., Sansone, Susanna-Assunta, Millet, Emilie J., van Eeuwijk, Fred, Ławrynowicz, Agnieszka, Krajewski, Paweł
Pubblicato in Sci Data (2020)

Finding useful data across multiple biomedical data repositories using DataMed

di Ohno-Machado, Lucila, Sansone, Susanna-Assunta, Alter, George, Fore, Ian, Grethe, Jeffrey, Xu, Hua, Gonzalez-Beltran, Alejandra, Rocca-Serra, Philippe, Gururaj, Anupama E, Bell, Elizabeth, Soysal, Ergin, Zong, Nansu, Kim, Hyeon-eui
Pubblicato in Nat Genet (2017)

MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data

di Haug, Kenneth, Salek, Reza M., Conesa, Pablo, Hastings, Janna, de Matos, Paula, Rijnbeek, Mark, Mahendraker, Tejasvi, Williams, Mark, Neumann, Steffen, Rocca-Serra, Philippe, Maguire, Eamonn, González-Beltrán, Alejandra, Sansone, Susanna-Assunta, Griffin, Julian L., Steinbeck, Christoph
Pubblicazione 2013

From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics

di González-Beltrán, Alejandra, Li, Peter, Zhao, Jun, Avila-Garcia, Maria Susana, Roos, Marco, Thompson, Mark, van der Horst, Eelke, Kaliyaperumal, Rajaram, Luo, Ruibang, Lee, Tin-Lap, Lam, Tak-wah, Edmunds, Scott C., Sansone, Susanna-Assunta, Rocca-Serra, Philippe
Pubblicato in PLoS One (2015)

The center for expanded data annotation and retrieval

di Musen, Mark A, Bean, Carol A, Cheung, Kei-Hoi, Dumontier, Michel, Durante, Kim A, Gevaert, Olivier, Gonzalez-Beltran, Alejandra, Khatri, Purvesh, Kleinstein, Steven H, O’Connor, Martin J, Pouliot, Yannick, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Wiser, Jeffrey A
Pubblicato in J Am Med Inform Assoc (2015)

DATS, the data tag suite to enable discoverability of datasets

di Sansone, Susanna-Assunta, Gonzalez-Beltran, Alejandra, Rocca-Serra, Philippe, Alter, George, Grethe, Jeffrey S., Xu, Hua, Fore, Ian M., Lyle, Jared, Gururaj, Anupama E., Chen, Xiaoling, Kim, Hyeon-eui, Zong, Nansu, Li, Yueling, Liu, Ruiling, Ozyurt, I. Burak, Ohno-Machado, Lucila
Pubblicato in Sci Data (2017)

Data standards can boost metabolomics research, and if there is a will, there is a way

di Rocca-Serra, Philippe, Salek, Reza M., Arita, Masanori, Correa, Elon, Dayalan, Saravanan, Gonzalez-Beltran, Alejandra, Ebbels, Tim, Goodacre, Royston, Hastings, Janna, Haug, Kenneth, Koulman, Albert, Nikolski, Macha, Oresic, Matej, Sansone, Susanna-Assunta, Schober, Daniel, Smith, James, Steinbeck, Christoph, Viant, Mark R., Neumann, Steffen
Pubblicato in Metabolomics (2015)

EBI metagenomics—a new resource for the analysis and archiving of metagenomic data

di Hunter, Sarah, Corbett, Matthew, Denise, Hubert, Fraser, Matthew, Gonzalez-Beltran, Alejandra, Hunter, Christopher, Jones, Philip, Leinonen, Rasko, McAnulla, Craig, Maguire, Eamonn, Maslen, John, Mitchell, Alex, Nuka, Gift, Oisel, Arnaud, Pesseat, Sebastien, Radhakrishnan, Rajesh, Rocca-Serra, Philippe, Scheremetjew, Maxim, Sterk, Peter, Vaughan, Daniel, Cochrane, Guy, Field, Dawn, Sansone, Susanna-Assunta
Pubblicazione 2014