The Intra-Host Evolutionary and Population Dynamics of Human Immunodeficiency Virus Type 1: A Phylogenetic Perspective

por Salemi, Marco
Publicado 2013

QuRe: software for viral quasispecies reconstruction from next-generation sequencing data

por Prosperi, Mattia C. F., Salemi, Marco
Publicado 2012

Coding-Gene Coevolution Analysis of Rotavirus Proteins: A Bioinformatics and Statistical Approach

por Abid, Nabil, Chillemi, Giovanni, Salemi, Marco
Publicado en Genes (Basel) (2019)

An exploratory algorithm to identify intra-host recombinant viral sequences

por Salemi, Marco, Gray, Rebecca R., Goodenow, Maureen M.
Publicado 2008

A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis

por Mavian, Carla, Marini, Simone, Prosperi, Mattia, Salemi, Marco
Publicado en JMIR Public Health Surveill (2020)

Correction: A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis

por Mavian, Carla, Marini, Simone, Prosperi, Mattia, Salemi, Marco
Publicado en JMIR Public Health Surveill (2020)

Authors' Reply to: Errors in Tracing Coronavirus SARS-CoV-2 Transmission Using a Maximum Likelihood Tree. Comment on “A Snapshot of SARS-CoV-2 Genome Availability up to April 2020...

por Mavian, Carla, Marini, Simone, Prosperi, Mattia, Salemi, Marco
Publicado en JMIR Public Health Surveill (2020)

Genome and plasmid diversity of Extended-Spectrum β-Lactamase-producing Escherichia coli ST131 – tracking phylogenetic trajectories with Bayesian inference

por Ny, Sofia, Sandegren, Linus, Salemi, Marco, Giske, Christian G.
Publicado en Sci Rep (2019)

A New Evolutionary Model for Hepatitis C Virus Chronic Infection

por Gray, Rebecca R., Salemi, Marco, Klenerman, Paul, Pybus, Oliver G.
Publicado 2012

Murine leukemia viruses (MuLV) and Xenotropic MuLV-related viruses exhibit inter-tropic complex recombination patterns

por Prosperi, Mattia C F, Switzer, William M, Heneine, Walid, Salemi, Marco
Publicado 2011

Prediction of R5, X4, and R5X4 HIV-1 Coreceptor Usage with Evolved Neural Networks

por Lamers, Susanna L., Salemi, Marco, McGrath, Michael S., Fogel, Gary B.
Publicado 2008

Evolutionary Rate and Genetic Drift of Hepatitis C Virus Are Not Correlated with the Host Immune Response: Studies of Infected Donor-Recipient Clusters

por Allain, Jean-Pierre, Dong, Yan, Vandamme, Anne-Mieke, Moulton, Vincent, Salemi, Marco
Publicado 2000

High-Resolution Molecular Epidemiology and Evolutionary History of HIV-1 Subtypes in Albania

por Salemi, Marco, de Oliveira, Tulio, Ciccozzi, Massimo, Rezza, Giovanni, Goodenow, Maureen M.
Publicado 2008

Thermodynamic and Phylogenetic Insights into hnRNP A1 Recognition of the HIV-1 Exon Splicing Silencer 3 Element

por Rollins, Carrie, Levengood, Jeffrey D., Rife, Brittany D., Salemi, Marco, Tolbert, Blanton S.
Publicado 2014

Solution Structure of the HIV-1 Intron Splicing Silencer and Its Interactions with the UP1 Domain of Heterogeneous Nuclear Ribonucleoprotein (hnRNP) A1

por Jain, Niyati, Morgan, Christopher E., Rife, Brittany D., Salemi, Marco, Tolbert, Blanton S.
Publicado en J Biol Chem (2016)

The global spread of Middle East respiratory syndrome: an analysis fusing traditional epidemiological tracing and molecular phylodynamics

por Min, Jae, Cella, Eleonora, Ciccozzi, Massimo, Pelosi, Antonello, Salemi, Marco, Prosperi, Mattia
Publicado en Glob Health Res Policy (2016)

Evaluation of global HIV/SIV envelope gp120 RNA structure and evolution within and among infected hosts

por Rife Magalis, Brittany, Kosakovsky Pond, Sergei L, Summers, Michael F, Salemi, Marco
Publicado en Virus Evol (2018)

Origin and dissemination of hepatitis B virus genotype C in East Asia revealed by phylodynamic analysis and historical correlates

por Lin, Serena Y. C., Magalis, Brittany Rife, Salemi, Marco, Liu, Hsin‐Fu
Publicado en J Viral Hepat (2018)

Functional avidity and IL-2/perforin production is linked to the emergence of mutations within HLA-B*5701-restricted epitopes and HIV-1 disease progression

por Buggert, Marcus, Norström, Melissa M, Salemi, Marco, Hecht, Frederick M, Karlsson, Annika C
Publicado 2014

Identification of Dual-Tropic HIV-1 Using Evolved Neural Networks

por Fogel, Gary B., Lamers, Susanna L., Liu, Enoch S., Salemi, Marco, McGrath, Michael S.
Publicado en Biosystems (2015)