QuRe: software for viral quasispecies reconstruction from next-generation sequencing data

por Prosperi, Mattia C. F., Salemi, Marco
Publicado 2012

Murine leukemia viruses (MuLV) and Xenotropic MuLV-related viruses exhibit inter-tropic complex recombination patterns

por Prosperi, Mattia C F, Switzer, William M, Heneine, Walid, Salemi, Marco
Publicado 2011

Challenges in interpreting allergen microarrays in relation to clinical symptoms: A machine learning approach

por Prosperi, Mattia C F, Belgrave, Danielle, Buchan, Iain, Simpson, Angela, Custovic, Adnan
Publicado en Pediatr Allergy Immunol (2014)

PhyloTempo: A Set of R Scripts for Assessing and Visualizing Temporal Clustering in Genealogies Inferred from Serially Sampled Viral Sequences

por Norström, Melissa M., Prosperi, Mattia C.F., Gray, Rebecca R., Karlsson, Annika C., Salemi, Marco
Publicado 2012

Empirical validation of viral quasispecies assembly algorithms: state-of-the-art and challenges

por Prosperi, Mattia C. F., Yin, Li, Nolan, David J., Lowe, Amanda D., Goodenow, Maureen M., Salemi, Marco
Publicado 2013

The Threshold Bootstrap Clustering: A New Approach to Find Families or Transmission Clusters within Molecular Quasispecies

por Prosperi, Mattia C. F., De Luca, Andrea, Di Giambenedetto, Simona, Bracciale, Laura, Fabbiani, Massimiliano, Cauda, Roberto, Salemi, Marco
Publicado 2010

Cost-Effectiveness of a Statewide Pre-Exposure Prophylaxis Program for Gay, Bisexual, and Other Men Who Have Sex with Men

por Goedel, William C., Chan, Philip A., King, Maximilian R.F., Prosperi, Mattia C.F., Marshall, Brandon D.L., Galárraga, Omar
Publicado en R I Med J (2013) (2019)

Challenges in Identifying Asthma Subgroups Using Unsupervised Statistical Learning Techniques

por Prosperi, Mattia C. F., Sahiner, Umit M., Belgrave, Danielle, Sackesen, Cansin, Buchan, Iain E., Simpson, Angela, Yavuz, Tolga S., Kalayci, Omer, Custovic, Adnan
Publicado 2013

Can Linear Regression Modeling Help Clinicians in the Interpretation of Genotypic Resistance Data? An Application to Derive a Lopinavir-Score

por Cozzi-Lepri, Alessandro, Prosperi, Mattia C. F., Kjær, Jesper, Dunn, David, Paredes, Roger, Sabin, Caroline A., Lundgren, Jens D., Phillips, Andrew N., Pillay, Deenan
Publicado 2011

Emergence of recombinant Mayaro virus strains from the Amazon basin

por Mavian, Carla, Rife, Brittany D., Dollar, James Jarad, Cella, Eleonora, Ciccozzi, Massimo, Prosperi, Mattia C. F., Lednicky, John, Morris, J. Glenn, Capua, Ilaria, Salemi, Marco
Publicado en Sci Rep (2017)

Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models

por Prosperi, Mattia C. F., Rosen-Zvi, Michal, Altmann, André, Zazzi, Maurizio, Di Giambenedetto, Simona, Kaiser, Rolf, Schülter, Eugen, Struck, Daniel, Sloot, Peter, van de Vijver, David A., Vandamme, Anne-Mieke, Sönnerborg, Anders
Publicado 2010

Correction: Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models

por Prosperi, Mattia C. F., Rosen-Zvi, Michal, Altmann, André, Zazzi, Maurizio, Di Giambenedetto, Simona, Kaiser, Rolf, Schülter, Eugen, Struck, Daniel, Sloot, Peter, van de Vijver, David A., Vandamme, Anne-Mieke, Sönnerborg, Anders
Publicado 2011

Brain tissue transcriptomic analysis of SIV-infected macaques identifies several altered metabolic pathways linked to neuropathogenesis and poly (ADP-ribose) polymerases (PARPs) as...

por Mavian, Carla, Ramirez-Mata, Andrea S., Dollar, James Jarad, Nolan, David J., Cash, Melanie, White, Kevin, Rich, Shannan N., Magalis, Brittany Rife, Marini, Simone, Prosperi, Mattia C. F., Amador, David Moraga, Riva, Alberto, Williams, Kenneth C., Salemi, Marco
Publicado en J Neurovirol (2021)

Spatiotemporal dynamics of simian immunodeficiency virus brain infection in CD8(+) lymphocyte-depleted rhesus macaques with neuroAIDS

por Strickland, Samantha L., Rife, Brittany D., Lamers, Susanna L., Nolan, David J., Veras, Nazle M. C., Prosperi, Mattia C. F., Burdo, Tricia H., Autissier, Patrick, Nowlin, Brian, Goodenow, Maureen M., Suchard, Marc A., Williams, Kenneth C., Salemi, Marco
Publicado en J Gen Virol (2014)

A novel methodology for large-scale phylogeny partition

por Prosperi, Mattia C.F., Ciccozzi, Massimo, Fanti, Iuri, Saladini, Francesco, Pecorari, Monica, Borghi, Vanni, Di Giambenedetto, Simona, Bruzzone, Bianca, Capetti, Amedeo, Vivarelli, Angela, Rusconi, Stefano, Re, Maria Carla, Gismondo, Maria Rita, Sighinolfi, Laura, Gray, Rebecca R., Salemi, Marco, Zazzi, Maurizio, De Luca, Andrea
Publicado en Nat Commun (2011)