A graph extension of the positional Burrows–Wheeler transform and its applications

Por Novak, Adam M., Garrison, Erik, Paten, Benedict
Publicado no Algorithms Mol Biol (2017)

How reliably can we predict the reliability of protein structure predictions?

Por Miklós, István, Novák ', Ádám, Dombai, Balázs, Hein, Jotun
Publicado em 2008

Reticular alignment: A progressive corner-cutting method for multiple sequence alignment

Por Szabó, Adrienn, Novák, Ádám, Miklós, István, Hein, Jotun
Publicado em 2010

Canonical, stable, general mapping using context schemes

Por Novak, Adam M., Rosen, Yohei, Haussler, David, Paten, Benedict
Publicado no Bioinformatics (2015)

BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC

Por Satija, Rahul, Novák, Ádám, Miklós, István, Lyngsø, Rune, Hein, Jotun
Publicado em 2009

Genome graphs and the evolution of genome inference

Por Paten, Benedict, Novak, Adam M., Eizenga, Jordan M., Garrison, Erik
Publicado no Genome Res (2017)

Simultaneous Bayesian Estimation of Alignment and Phylogeny under a Joint Model of Protein Sequence and Structure

Por Herman, Joseph L., Challis, Christopher J., Novák, Ádám, Hein, Jotun, Schmidler, Scott C.
Publicado em 2014

Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs

Por Herman, Joseph L, Novák, Ádám, Lyngsø, Rune, Szabó, Adrienn, Miklós, István, Hein, Jotun
Publicado no BMC Bioinformatics (2015)

Characterising RNA secondary structure space using information entropy

Por Sükösd, Zsuzsanna, Knudsen, Bjarne, Anderson, James WJ, Novák, Ádám, Kjems, Jørgen, Pedersen, Christian NS
Publicado em 2013

Quantifying variances in comparative RNA secondary structure prediction

Por Anderson, James WJ, Novák, Ádám, Sükösd, Zsuzsanna, Golden, Michael, Arunapuram, Preeti, Edvardsson, Ingolfur, Hein, Jotun
Publicado em 2013

Modeling the Role of Negative Cooperativity in Metabolic Regulation and Homeostasis

Por Bush, Eliot C., Clark, Anne E., DeBoever, Chris M., Haynes, Lillian E., Hussain, Sidra, Ma, Singer, McDermott, Matthew M., Novak, Adam M., Wentworth, John S.
Publicado em 2012

Correction: Modeling the Role of Negative Cooperativity in Metabolic Regulation and Homeostasis

Por Bush, Eliot C., Clark, Anne E., DeBoever, Chris M., Haynes, Lillian E., Hussain, Sidra, Ma, Singer, McDermott, Matthew B.A., Novak, Adam M., Wentworth, John S.
Publicado em 2013

The NIH BD2K center for big data in translational genomics

Por Paten, Benedict, Diekhans, Mark, Druker, Brian J, Friend, Stephen, Guinney, Justin, Gassner, Nadine, Guttman, Mitchell, James Kent, W, Mantey, Patrick, Margolin, Adam A, Massie, Matt, Novak, Adam M, Nothaft, Frank, Pachter, Lior, Patterson, David, Smuga-Otto, Maciej, Stuart, Joshua M, Van’t Veer, Laura, Wold, Barbara, Haussler, David
Publicado no J Am Med Inform Assoc (2015)

Toil enables reproducible, open source, big biomedical data analyses

Por Vivian, John, Rao, Arjun Arkal, Nothaft, Frank Austin, Ketchum, Christopher, Armstrong, Joel, Novak, Adam, Pfeil, Jacob, Narkizian, Jake, Deran, Alden D, Musselman-Brown, Audrey, Schmidt, Hannes, Amstutz, Peter, Craft, Brian, Goldman, Mary, Rosenbloom, Kate, Cline, Melissa, O’Connor, Brian, Hanna, Megan, Birger, Chet, Kent, W James, Patterson, David A, Joseph, Anthony D, Zhu, Jingchun, Zaranek, Sasha, Getz, Gad, Haussler, David, Paten, Benedict
Publicado no Nat Biotechnol (2017)