GSVA: gene set variation analysis for microarray and RNA-Seq data

Por Hänzelmann, Sonja, Castelo, Robert, Guinney, Justin
Publicado em 2013

STEPWISE GROUP SPARSE REGRESSION (SGSR): GENE-SET-BASED PHARMACOGENOMIC PREDICTIVE MODELS WITH STEPWISE SELECTION OF FUNCTIONAL PRIORS()

Por JANG, IN SOCK, DIENSTMANN, RODRIGO, MARGOLIN, ADAM A., GUINNEY, JUSTIN
Publicado no Pac Symp Biocomput (2015)

F-Seq: a feature density estimator for high-throughput sequence tags

Por Boyle, Alan P., Guinney, Justin, Crawford, Gregory E., Furey, Terrence S.
Publicado em 2008

Prospective: Database of genomic biomarkers for cancer drugs and clinical targetability in solid tumors

Por Dienstmann, Rodrigo, Jang, In Sock, Bot, Brian, Friend, Stephen, Guinney, Justin
Publicado no Cancer Discov (2015)

Modeling Cancer Progression via Pathway Dependencies

Por Edelman, Elena J, Guinney, Justin, Chi, Jen-Tsan, Febbo, Phillip G, Mukherjee, Sayan
Publicado em 2008

SYSTEMATIC ASSESSMENT OF ANALYTICAL METHODS FOR DRUG SENSITIVITY PREDICTION FROM CANCER CELL LINE DATA

Por Jang, In Sock, Neto, Elias Chaibub, Guinney, Justin, Friend, Stephen H., Margolin, Adam A.
Publicado em 2014

rCGH: a comprehensive array-based genomic profile platform for precision medicine

Por Commo, Frederic, Guinney, Justin, Ferté, Charles, Bot, Brian, Lefebvre, Celine, Soria, Jean-Charles, André, Fabrice
Publicado no Bioinformatics (2016)

Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge

Por Huang, Chia-Ling, Lamb, John, Chindelevitch, Leonid, Kostrowicki, Jarek, Guinney, Justin, DeLisi, Charles, Ziemek, Daniel
Publicado em 2012

A 10-Gene Progenitor Cell Signature Predicts Poor Prognosis in Lung Adenocarcnioma

Por Onaitis, Mark, D’Amico, Thomas A., Clark, Cheryl P., Guinney, Justin, Harpole, David H., Rawlins, Emma L.
Publicado em 2011

Evidence for type II cells as cells of origin of K-Ras–induced distal lung adenocarcinoma

Por Xu, Xia, Rock, Jason R., Lu, Yun, Futtner, Christopher, Schwab, Brian, Guinney, Justin, Hogan, Brigid L. M., Onaitis, Mark W.
Publicado em 2012

Integrating Genetic Association, Genetics of Gene Expression, and Single Nucleotide Polymorphism Set Analysis to Identify Susceptibility Loci for Type 2 Diabetes Mellitus

Por Greenawalt, Danielle M., Sieberts, Solveig K., Cornelis, Marilyn C., Girman, Cynthia J., Zhong, Hua, Yang, Xia, Guinney, Justin, Qi, Lu, Hu, Frank B.
Publicado em 2012

Impact of bioinformatic procedures in the development and translation of high-throughput molecular classifiers in Oncology

Por Ferté, Charles, Trister, Andrew D., Huang, Erich, Bot, Brian M., Guinney, Justin, Commo, Frederic, Sieberts, Solveig, André, Fabrice, Besse, Benjamin, Soria, Jean-Charles, Friend, Stephen H.
Publicado em 2013

A high-throughput molecular data resource for cutaneous neurofibromas

Por Gosline, Sara J.C., Weinberg, Hubert, Knight, Pamela, Yu, Thomas, Guo, Xindi, Prasad, Nripesh, Jones, Angela, Shrestha, Shristi, Boone, Braden, Levy, Shawn E., La Rosa, Salvatore, Guinney, Justin, Bakker, Annette
Publicado no Sci Data (2017)

Molecular Markers Identify Subtypes of Stage III Colon Cancer Associated with Patient Outcomes

Por Sinicrope, Frank A., Shi, Qian, Smyrk, Thomas C., Thibodeau, Stephen N., Dienstmann, Rodrigo, Guinney, Justin, Bot, Brian M., Tejpar, Sabine, Delorenzi, Mauro, Goldberg, Richard M., Mahoney, Michelle, Sargent, Daniel J., Alberts, Steven R.
Publicado no Gastroenterology (2014)

Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates

Por Hannum, Gregory, Guinney, Justin, Zhao, Ling, Zhang, Li, Hughes, Guy, Sadda, SriniVas, Klotzle, Brandy, Bibikova, Marina, Fan, Jian-Bing, Gao, Yuan, Deconde, Rob, Chen, Menzies, Rajapakse, Indika, Friend, Stephen, Ideker, Trey, Zhang, Kang
Publicado em 2012

Modeling RAS phenotype in colorectal cancer uncovers novel molecular traits of RAS dependency and improves prediction of response to targeted agents in patients

Por Guinney, Justin, Ferté, Charles, Dry, Jonathan, McEwen, Robert, Manceau, Gilles, Kao, KJ, Chang, Kai-Ming, Bendtsen, Claus, Hudson, Kevin, Huang, Erich, Dougherty, Brian, Ducreux, Michel, Soria, Jean-Charles, Friend, Stephen, Derry, Jonathan, Laurent-Puig, Pierre
Publicado em 2013

CTCF haploinsufficiency destabilizes DNA methylation and predisposes to cancer

Por Kemp, Christopher J., Moore, James M., Moser, Russell, Bernard, Brady, Teater, Matt, Smith, Leslie E., Rabaia, Natalia, Gurley, Kay E., Guinney, Justin, Busch, Stephanie E., Shaknovich, Rita, Lobanenkov, Victor V., Liggitt, Denny, Shmulevich, Ilya, Melnick, Ari, Filippova, Galina N.
Publicado em 2014

AMERICAN JOINT COMMITTEE ON CANCER ACCEPTANCE CRITERIA FOR INCLUSION OF RISK MODELS FOR INDIVIDUALIZED PROGNOSIS IN THE PRACTICE OF PRECISION MEDICINE

Por Kattan, Michael W., Hess, Kenneth R., Amin, Mahul, Lu, Ying, Moons, Karel G, Gershenwald, Jeffrey E., Gimotty, Phyllis A., Guinney, Justin, Halabi, Susan, Lazar, Alexander J., Mahar, Alyson L., Patel, Tushar, Sargent, Daniel J., Weiser, Martin R., Compton, Carolyn
Publicado no CA Cancer J Clin (2016)

The NIH BD2K center for big data in translational genomics

Por Paten, Benedict, Diekhans, Mark, Druker, Brian J, Friend, Stephen, Guinney, Justin, Gassner, Nadine, Guttman, Mitchell, James Kent, W, Mantey, Patrick, Margolin, Adam A, Massie, Matt, Novak, Adam M, Nothaft, Frank, Pachter, Lior, Patterson, David, Smuga-Otto, Maciej, Stuart, Joshua M, Van’t Veer, Laura, Wold, Barbara, Haussler, David
Publicado no J Am Med Inform Assoc (2015)

Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling

Por Bilal, Erhan, Dutkowski, Janusz, Guinney, Justin, Jang, In Sock, Logsdon, Benjamin A., Pandey, Gaurav, Sauerwine, Benjamin A., Shimoni, Yishai, Moen Vollan, Hans Kristian, Mecham, Brigham H., Rueda, Oscar M., Tost, Jorg, Curtis, Christina, Alvarez, Mariano J., Kristensen, Vessela N., Aparicio, Samuel, Børresen-Dale, Anne-Lise, Caldas, Carlos, Califano, Andrea, Friend, Stephen H., Ideker, Trey, Schadt, Eric E., Stolovitzky, Gustavo A., Margolin, Adam A.
Publicado em 2013