Rewiring makes the difference

Por Califano, Andrea
Publicado em 2011

hARACNe: improving the accuracy of regulatory model reverse engineering via higher-order data processing inequality tests

Por Jang, In Sock, Margolin, Adam, Califano, Andrea
Publicado em 2013

Reverse-engineering human regulatory networks

Por Lefebvre, Celine, Rieckhof, Gabrielle, Califano, Andrea
Publicado em 2012

ScreenBEAM: a novel meta-analysis algorithm for functional genomics screens via Bayesian hierarchical modeling

Por Yu, Jiyang, Silva, Jose, Califano, Andrea
Publicado no Bioinformatics (2016)

MASTER REGULATORS USED AS BREAST CANCER METASTASIS CLASSIFIER

Por Lim, Wei Keat, Lyashenko, Eugenia, Califano, Andrea
Publicado em 2009

Discovering transcriptional regulatory regions in Drosophila by a nonalignment method for phylogenetic footprinting

Por Sosinsky, Alona, Honig, Barry, Mann, Richard S., Califano, Andrea
Publicado em 2007

Pattern-based mining strategy to detect multi-locus association and gene × environment interaction

Por Li, Zhong, Zheng, Tian, Califano, Andrea, Floratos, Aris
Publicado em 2007

A Systems Biology Approach to Transcription Factor Binding Site Prediction

Por Zhou, Xiang, Sumazin, Pavel, Rajbhandari, Presha, Califano, Andrea
Publicado em 2010

DIGGIT: a Bioconductor package to infer genetic variants driving cellular phenotypes

Por Alvarez, Mariano J., Chen, James C., Califano, Andrea
Publicado no Bioinformatics (2015)

Correlating measurements across samples improves accuracy of large-scale expression profile experiments

Por Alvarez, Mariano Javier, Sumazin, Pavel, Rajbhandari, Presha, Califano, Andrea
Publicado em 2009

Using systems and structure biology tools to dissect cellular phenotypes

Por Floratos, Aris, Honig, Barry, Pe'er, Dana, Califano, Andrea
Publicado em 2011

ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information

Por Lachmann, Alexander, Giorgi, Federico M., Lopez, Gonzalo, Califano, Andrea
Publicado no Bioinformatics (2016)

geWorkbench: an open source platform for integrative genomics

Por Floratos, Aris, Smith, Kenneth, Ji, Zhou, Watkinson, John, Califano, Andrea
Publicado em 2010

Leveraging models of cell regulation and GWAS data in integrative network-based association studies

Por Califano, Andrea, Butte, Atul J, Friend, Stephen, Ideker, Trey, Schadt, Eric
Publicado em 2012

The Cyni framework for network inference in Cytoscape

Por Guitart-Pla, Oriol, Kustagi, Manjunath, Rügheimer, Frank, Califano, Andrea, Schwikowski, Benno
Publicado no Bioinformatics (2015)

ChIP-on-chip significance analysis reveals ubiquitous transcription factor binding

Por Margolin, Adam A, Palomero, Teresa, Ferrando, Adolfo A, Califano, Andrea, Stolovitzky, Gustavo
Publicado no BMC Bioinformatics (2007)

A Systems Approach to Drug Discovery in Alzheimer’s Disease

Por Shelanski, Michael, Shin, William, Aubry, Soline, Sims, Peter, Alvarez, Mariano J., Califano, Andrea
Publicado no Neurotherapeutics (2015)

Toward better benchmarking: challenge-based methods assessment in cancer genomics

Por Boutros, Paul C, Margolin, Adam A, Stuart, Joshua M, Califano, Andrea, Stolovitzky, Gustavo
Publicado no Genome Biol (2014)

Elucidation and pharmacological targeting of novel molecular drivers of follicular lymphoma progression

Por Bisikirska, Brygida, Bansal, Mukesh, Shen, Yao, Teruya-Feldstein, Julie, Chaganti, Raju, Califano, Andrea
Publicado no Cancer Res (2015)

ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes

Por Margolin, Adam A., Palomero, Teresa, Sumazin, Pavel, Califano, Andrea, Ferrando, Adolfo A., Stolovitzky, Gustavo
Publicado em 2009