Pan-Cancer and Single-Cell Modeling of Genomic Alterations Through Gene Expression

Por Mercatelli, Daniele, Ray, Forest, Giorgi, Federico M.
Publicado no Front Genet (2019)

ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information

Por Lachmann, Alexander, Giorgi, Federico M., Lopez, Gonzalo, Califano, Andrea
Publicado no Bioinformatics (2016)

Algorithm-driven Artifacts in median polish summarization of Microarray data

Por Giorgi, Federico M, Bolger, Anthony M, Lohse, Marc, Usadel, Bjoern
Publicado em 2010

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

Por Del Fabbro, Cristian, Scalabrin, Simone, Morgante, Michele, Giorgi, Federico M.
Publicado em 2013

CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia

Por Hughes, James M, Salvatori, Beatrice, Giorgi, Federico M, Bozzoni, Irene, Fatica, Alessandro
Publicado em 2014

Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera

Por Licausi, Francesco, Giorgi, Federico M, Zenoni, Sara, Osti, Fabio, Pezzotti, Mario, Perata, Pierdomenico
Publicado em 2010

Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information

Por Giorgi, Federico M., Lopez, Gonzalo, Woo, Jung H., Bisikirska, Brygida, Califano, Andrea, Bansal, Mukesh
Publicado em 2014

Correction: Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information

Por Giorgi, Federico M., Lopez, Gonzalo, Woo, Jung H., Bisikirska, Brygida, Califano, Andrea, Bansal, Mukesh
Publicado no PLoS One (2016)

SLocX: Predicting Subcellular Localization of Arabidopsis Proteins Leveraging Gene Expression Data

Por Ryngajllo, Malgorzata, Childs, Liam, Lohse, Marc, Giorgi, Federico M., Lude, Anja, Selbig, Joachim, Usadel, Björn
Publicado em 2011

Network-based inference of protein activity helps functionalize the genetic landscape of cancer

Por Alvarez, Mariano J., Shen, Yao, Giorgi, Federico M., Lachmann, Alexander, Ding, B. Belinda, Ye, B. Hilda, Califano, Andrea
Publicado no Nat Genet (2016)

VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer

Por Holding, Andrew N., Giorgi, Federico M., Donnelly, Amanda, Cullen, Amy E., Nagarajan, Sankari, Selth, Luke A., Markowetz, Florian
Publicado no Genome Biol (2019)

Correction to: VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer

Por Holding, Andrew N., Giorgi, Federico M., Donnelly, Amanda, Cullen, Amy E., Nagarajan, Sankari, Selth, Luke A., Markowetz, Florian
Publicado no Genome Biol (2019)

Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum)

Por Lee, Yang Ping, Giorgi, Federico M, Lohse, Marc, Kvederaviciute, Kotryna, Klages, Sven, Usadel, Björn, Meskiene, Irute, Reinhardt, Richard, Hincha, Dirk K
Publicado em 2013

PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species([W])([OA])

Por Mutwil, Marek, Klie, Sebastian, Tohge, Takayuki, Giorgi, Federico M., Wilkins, Olivia, Campbell, Malcolm M., Fernie, Alisdair R., Usadel, Björn, Nikoloski, Zoran, Persson, Staffan
Publicado em 2011

Misexpression of a Chloroplast Aspartyl Protease Leads to Severe Growth Defects and Alters Carbohydrate Metabolism in Arabidopsis(1)([C])([W])

Por Paparelli, Eleonora, Gonzali, Silvia, Parlanti, Sandro, Novi, Giacomo, Giorgi, Federico M., Licausi, Francesco, Kosmacz, Monika, Feil, Regina, Lunn, John E., Brust, Henrike, van Dongen, Joost T., Steup, Martin, Perata, Pierdomenico
Publicado em 2012

Robin: An Intuitive Wizard Application for R-Based Expression Microarray Quality Assessment and Analysis(1)([W])([OA])

Por Lohse, Marc, Nunes-Nesi, Adriano, Krüger, Peter, Nagel, Axel, Hannemann, Jan, Giorgi, Federico M., Childs, Liam, Osorio, Sonia, Walther, Dirk, Selbig, Joachim, Sreenivasulu, Nese, Stitt, Mark, Fernie, Alisdair R., Usadel, Björn
Publicado em 2010

A CLK3-HMGA2 alternative splicing axis impacts human hematopoietic stem cell molecular identity throughout development

Por Cesana, Marcella, Guo, Michael H., Cacchiarelli, Davide, Wahlster, Lara, Barragan, Jessica, Doulatov, Sergei, Vo, Linda T., Salvatori, Beatrice, Trapnell, Cole, Clement, Kendell, Cahan, Patrick, Tsanov, Kaloyan M., Sousa, Patricia M., Tazon-Vega, Barbara, Bolondi, Adriano, Giorgi, Federico M., Califano, Andrea, Rinn, John L., Meissner, Alexander, Hirschhorn, Joel N., Daley, George Q.
Publicado no Cell Stem Cell (2018)