Gene Expression Network Reconstruction by Convex Feature Selection when Incorporating Genetic Perturbations

Por Logsdon, Benjamin A., Mezey, Jason
Publicado em 2010

A variational Bayes algorithm for fast and accurate multiple locus genome-wide association analysis

Por Logsdon, Benjamin A, Hoffman, Gabriel E, Mezey, Jason G
Publicado em 2010

Mouse obesity network reconstruction with a variational Bayes algorithm to employ aggressive false positive control

Por Logsdon, Benjamin A, Hoffman, Gabriel E, Mezey, Jason G
Publicado em 2012

PUMA: A Unified Framework for Penalized Multiple Regression Analysis of GWAS Data

Por Hoffman, Gabriel E., Logsdon, Benjamin A., Mezey, Jason G.
Publicado em 2013

Identifying Network Perturbation in Cancer

Por Grechkin, Maxim, Logsdon, Benjamin A., Gentles, Andrew J., Lee, Su-In
Publicado no PLoS Comput Biol (2016)

SPINE: SParse eIgengene NEtwork Linking Gene Expression Clusters in Dehalococcoides mccartyi to Perturbations in Experimental Conditions

Por Mansfeldt, Cresten B., Logsdon, Benjamin A., Debs, Garrett E., Richardson, Ruth E.
Publicado no PLoS One (2015)

Quantitative Trait Loci for the Circadian Clock in Neurospora crassa

Por Kim, Tae-Sung, Logsdon, Benjamin A., Park, Sohyun, Mezey, Jason G., Lee, Kwangwon
Publicado em 2007

A novel variational Bayes multiple locus Z-statistic for genome-wide association studies with Bayesian model averaging

Por Logsdon, Benjamin A., Carty, Cara L., Reiner, Alexander P., Dai, James Y., Kooperberg, Charles
Publicado em 2012

Sparse expression bases in cancer reveal tumor drivers

Por Logsdon, Benjamin A., Gentles, Andrew J., Miller, Chris P., Blau, C. Anthony, Becker, Pamela S., Lee, Su-In
Publicado no Nucleic Acids Res (2015)

Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer

Por Celik, Safiye, Logsdon, Benjamin A., Battle, Stephanie, Drescher, Charles W., Rendi, Mara, Hawkins, R. David, Lee, Su-In
Publicado no Genome Med (2016)

Simultaneously Testing for Marginal Genetic Association and Gene-Environment Interaction

Por Dai, James Y., Logsdon, Benjamin A., Huang, Ying, Hsu, Li, Reiner, Alexander P., Prentice, Ross L., Kooperberg, Charles
Publicado em 2012

Identifying and ranking potential driver genes of Alzheimer’s disease using multiview evidence aggregation

Por Mukherjee, Sumit, Perumal, Thanneer M, Daily, Kenneth, Sieberts, Solveig K, Omberg, Larsson, Preuss, Christoph, Carter, Gregory W, Mangravite, Lara M, Logsdon, Benjamin A
Publicado no Bioinformatics (2019)

Transcriptomic stratification of late-onset Alzheimer's cases reveals novel genetic modifiers of disease pathology

Por Milind, Nikhil, Preuss, Christoph, Haber, Annat, Ananda, Guruprasad, Mukherjee, Shubhabrata, John, Cai, Shapley, Sarah, Logsdon, Benjamin A., Crane, Paul K., Carter, Gregory W.
Publicado no PLoS Genet (2020)

A machine learning approach to integrate big data for precision medicine in acute myeloid leukemia

Por Lee, Su-In, Celik, Safiye, Logsdon, Benjamin A., Lundberg, Scott M., Martins, Timothy J., Oehler, Vivian G., Estey, Elihu H., Miller, Chris P., Chien, Sylvia, Dai, Jin, Saxena, Akanksha, Blau, C. Anthony, Becker, Pamela S.
Publicado no Nat Commun (2018)

Large-scale proteomic analysis of human brain identifies proteins associated with cognitive trajectory in advanced age

Por Wingo, Aliza P., Dammer, Eric B., Breen, Michael S., Logsdon, Benjamin A., Duong, Duc M., Troncosco, Juan C., Thambisetty, Madhav, Beach, Thomas G., Serrano, Geidy E., Reiman, Eric M., Caselli, Richard J., Lah, James J., Seyfried, Nicholas T., Levey, Allan I., Wingo, Thomas S.
Publicado no Nat Commun (2019)

A variational Bayes discrete mixture test for rare variant association

Por Logsdon, Benjamin A., Dai, James Y., Auer, Paul L., Johnsen, Jill M., Ganesh, Santhi K., Smith, Nicholas L., Wilson, James G., Tracy, Russell P., Lange, Leslie A., Jiao, Shuo, Rich, Stephen S., Lettre, Guillaume, Carlson, Christopher S., Jackson, Rebecca D., O’Donnell, Christopher J., Wurfel, Mark M., Nickerson, Deborah A., Tang, Hua, Reiner, Alexander P., Kooperberg, Charles
Publicado em 2014

Imputation of Exome Sequence Variants into Population- Based Samples and Blood-Cell-Trait-Associated Loci in African Americans: NHLBI GO Exome Sequencing Project

Por Auer, Paul L., Johnsen, Jill M., Johnson, Andrew D., Logsdon, Benjamin A., Lange, Leslie A., Nalls, Michael A., Zhang, Guosheng, Franceschini, Nora, Fox, Keolu, Lange, Ethan M., Rich, Stephen S., O’Donnell, Christopher J., Jackson, Rebecca D., Wallace, Robert B., Chen, Zhao, Graubert, Timothy A., Wilson, James G., Tang, Hua, Lettre, Guillaume, Reiner, Alex P., Ganesh, Santhi K., Li, Yun
Publicado em 2012

A Meta-Analysis and Genome-Wide Association Study of Platelet Count and Mean Platelet Volume in African Americans

Por Qayyum, Rehan, Snively, Beverly M., Ziv, Elad, Nalls, Michael A., Liu, Yongmei, Tang, Weihong, Yanek, Lisa R., Lange, Leslie, Evans, Michele K., Ganesh, Santhi, Austin, Melissa A., Lettre, Guillaume, Becker, Diane M., Zonderman, Alan B., Singleton, Andrew B., Harris, Tamara B., Mohler, Emile R., Logsdon, Benjamin A., Kooperberg, Charles, Folsom, Aaron R., Wilson, James G., Becker, Lewis C., Reiner, Alexander P.
Publicado em 2012

Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling

Por Bilal, Erhan, Dutkowski, Janusz, Guinney, Justin, Jang, In Sock, Logsdon, Benjamin A., Pandey, Gaurav, Sauerwine, Benjamin A., Shimoni, Yishai, Moen Vollan, Hans Kristian, Mecham, Brigham H., Rueda, Oscar M., Tost, Jorg, Curtis, Christina, Alvarez, Mariano J., Kristensen, Vessela N., Aparicio, Samuel, Børresen-Dale, Anne-Lise, Caldas, Carlos, Califano, Andrea, Friend, Stephen H., Ideker, Trey, Schadt, Eric E., Stolovitzky, Gustavo A., Margolin, Adam A.
Publicado em 2013

Gene Expression Elucidates Functional Impact of Polygenic Risk for Schizophrenia

Por Fromer, Menachem, Roussos, Panos, Sieberts, Solveig K, Johnson, Jessica S, Kavanagh, David H, Perumal, Thanneer M, Ruderfer, Douglas M, Oh, Edwin C, Topol, Aaron, Shah, Hardik R, Klei, Lambertus L, Kramer, Robin, Pinto, Dalila, Gümüş, Zeynep H, Cicek, A. Ercument, Dang, Kristen K, Browne, Andrew, Lu, Cong, Xie, Lu, Readhead, Ben, Stahl, Eli A, Parvizi, Mahsa, Hamamsy, Tymor, Fullard, John F, Wang, Ying-Chih, Mahajan, Milind C, Derry, Jonathan M J, Dudley, Joel, Hemby, Scott E, Logsdon, Benjamin A, Talbot, Konrad, Raj, Towfique, Bennett, David A, De Jager, Philip L, Zhu, Jun, Zhang, Bin, Sullivan, Patrick F, Chess, Andrew, Purcell, Shaun M, Shinobu, Leslie A, Mangravite, Lara M, Toyoshiba, Hiroyoshi, Gur, Raquel E, Hahn, Chang-Gyu, Lewis, David A, Haroutunian, Vahram, Peters, Mette A, Lipska, Barbara K, Buxbaum, Joseph D, Schadt, Eric E, Hirai, Keisuke, Roeder, Kathryn, Brennand, Kristen J, Katsanis, Nicholas, Domenici, Enrico, Devlin, Bernie, Sklar, Pamela
Publicado no Nat Neurosci (2016)