A cubic algorithm for the generalized rank median of three genomes

Por Chindelevitch, Leonid, La, Sean, Meidanis, Joao
Publicado no Algorithms Mol Biol (2019)

A new resolution function to evaluate tree shape statistics

Por Hayati, Maryam, Shadgar, Bita, Chindelevitch, Leonid
Publicado no PLoS One (2019)

An exact arithmetic toolbox for a consistent and reproducible structural analysis of metabolic network models

Por Chindelevitch, Leonid, Trigg, Jason, Regev, Aviv, Berger, Bonnie
Publicado em 2014

Reply to “Do genome-scale models need exact solvers or clearer standards?”

Por Chindelevitch, Leonid, Trigg, Jason, Regev, Aviv, Berger, Bonnie
Publicado no Mol Syst Biol (2015)

On the rank-distance median of 3 permutations

Por Chindelevitch, Leonid, Pereira Zanetti, João Paulo, Meidanis, João
Publicado no BMC Bioinformatics (2018)

MCS(2): minimal coordinated supports for fast enumeration of minimal cut sets in metabolic networks

Por Miraskarshahi, Reza, Zabeti, Hooman, Stephen, Tamon, Chindelevitch, Leonid
Publicado no Bioinformatics (2019)

Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework

Por Gan, Guo Liang, Willie, Elijah, Chauve, Cedric, Chindelevitch, Leonid
Publicado no BMC Bioinformatics (2019)

MetaMerge: scaling up genome-scale metabolic reconstructions with application to Mycobacterium tuberculosis

Por Chindelevitch, Leonid, Stanley, Sarah, Hung, Deborah, Regev, Aviv, Berger, Bonnie
Publicado em 2012

Optimizing a global alignment of protein interaction networks

Por Chindelevitch, Leonid, Ma, Cheng-Yu, Liao, Chung-Shou, Berger, Bonnie
Publicado em 2013

ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections

Por Chindelevitch, Leonid, Colijn, Caroline, Moodley, Prashini, Wilson, Douglas, Cohen, Ted
Publicado no PLoS Comput Biol (2016)

Assessing statistical significance in causal graphs

Por Chindelevitch, Leonid, Loh, Po-Ru, Enayetallah, Ahmed, Berger, Bonnie, Ziemek, Daniel
Publicado em 2012

Evaluating the potential impact of enhancing HIV treatment and tuberculosis control programmes on the burden of tuberculosis

Por Chindelevitch, Leonid, Menzies, Nicolas A., Pretorius, Carel, Stover, John, Salomon, Joshua A., Cohen, Ted
Publicado no J R Soc Interface (2015)

Collaborative intra-tumor heterogeneity detection

Por Khakabimamaghani, Sahand, Malikic, Salem, Tang, Jeffrey, Ding, Dujian, Morin, Ryan, Chindelevitch, Leonid, Ester, Martin
Publicado no Bioinformatics (2019)

Within-Host Heterogeneity of Mycobacterium tuberculosis Infection Is Associated With Poor Early Treatment Response: A Prospective Cohort Study

Por Cohen, Ted, Chindelevitch, Leonid, Misra, Reshma, Kempner, Maria E., Galea, Jerome, Moodley, Prashini, Wilson, Douglas
Publicado no J Infect Dis (2016)

Reply to Chen et al

Por Cohen, Ted, Chindelevitch, Leonid, Misra, Reshma, Kempner, Maria E., Galea, Jerome, Moodley, Prashini, Wilson, Douglas
Publicado no J Infect Dis (2016)

MentaLiST – A fast MLST caller for large MLST schemes

Por Feijao, Pedro, Yao, Hua-Ting, Fornika, Dan, Gardy, Jennifer, Hsiao, William, Chauve, Cedric, Chindelevitch, Leonid
Publicado no Microb Genom (2018)

Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge

Por Huang, Chia-Ling, Lamb, John, Chindelevitch, Leonid, Kostrowicki, Jarek, Guinney, Justin, DeLisi, Charles, Ziemek, Daniel
Publicado em 2012

Relatedness of the incidence decay with exponential adjustment (IDEA) model, “Farr's law” and SIR compartmental difference equation models

Por Santillana, Mauricio, Tuite, Ashleigh, Nasserie, Tahmina, Fine, Paul, Champredon, David, Chindelevitch, Leonid, Dushoff, Jonathan, Fisman, David
Publicado no Infect Dis Model (2018)

Towards better prediction of Mycobacterium tuberculosis lineages from MIRU-VNTR data

Por Thain, Nithum, Le, Christopher, Crossa, Aldo, Ahuja, Shama Desai, Meissner, Jeanne Sullivan, Mathema, Barun, Kreiswirth, Barry, Kurepina, Natalia, Cohen, Ted, Chindelevitch, Leonid
Publicado no Infect Genet Evol (2018)

PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals

Por Katebi, Mohsen, Feijao, Pedro, Booth, Julius, Mansouri, Mehrdad, La, Sean, Sweeten, Alex, Miraskarshahi, Reza, Nguyen, Matthew, Wong, Johnathan, Hsiao, William, Chauve, Cedric, Chindelevitch, Leonid
Publicado no Algorithms for Computational Biology (2020)