Analysis and visualization of functional relationships between RNA expression and clinical annotation using PathlinX.

Por Carter, Scott L.
Publicado em 2002

Clonal evolution in hematologic malignancies and therapeutic implications

Por Landau, Dan A., Carter, Scott L., Getz, Gad, Wu, Catherine J.
Publicado em 2013

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements

Por Carter, Scott L, Eklund, Aron C, Mecham, Brigham H, Kohane, Isaac S, Szallasi, Zoltan
Publicado em 2005

Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability

Por Drier, Yotam, Lawrence, Michael S., Carter, Scott L., Stewart, Chip, Gabriel, Stacey B., Lander, Eric S., Meyerson, Matthew, Beroukhim, Rameen, Getz, Gad
Publicado em 2013

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

Por Cibulskis, Kristian, Lawrence, Michael S., Carter, Scott L., Sivachenko, Andrey, Jaffe, David, Sougnez, Carrie, Gabriel, Stacey, Meyerson, Matthew, Lander, Eric S., Getz, Gad
Publicado em 2013

High-resolution mapping of copy-number alterations with massively parallel sequencing

Por Chiang, Derek Y., Getz, Gad, Jaffe, David B., O’Kelly, Michael J. T., Zhao, Xiaojun, Carter, Scott L., Russ, Carsten, Nusbaum, Chad, Meyerson, Matthew, Lander, Eric S.
Publicado em 2008

A tumor suppressor complex with GAP activity for the Rag GTPases that signal amino acid sufficiency to mTORC1

Por Bar-Peled, Liron, Chantranupong, Lynne, Cherniack, Andrew D., Chen, Walter W., Ottina, Kathleen A., Grabiner, Brian C., Spear, Eric D., Carter, Scott L., Meyerson, Matthew, Sabatini, David M.
Publicado em 2013

A remarkably simple genome underlies highly malignant pediatric rhabdoid cancers

Por Lee, Ryan S., Stewart, Chip, Carter, Scott L., Ambrogio, Lauren, Cibulskis, Kristian, Sougnez, Carrie, Lawrence, Michael S., Auclair, Daniel, Mora, Jaume, Golub, Todd R., Biegel, Jaclyn A., Getz, Gad, Roberts, Charles W.M.
Publicado em 2012

An APOBEC Cytidine Deaminase Mutagenesis Pattern is Widespread in Human Cancers

Por Roberts, Steven A., Lawrence, Michael S., Klimczak, Leszek J., Grimm, Sara A., Fargo, David, Stojanov, Petar, Kiezun, Adam, Kryukov, Gregory V., Carter, Scott L., Saksena, Gordon, Harris, Shawn, Shah, Ruchir R., Resnick, Michael A., Getz, Gad, Gordenin, Dmitry A.
Publicado em 2013

Inferring tumour purity and stromal and immune cell admixture from expression data

Por Yoshihara, Kosuke, Shahmoradgoli, Maria, Martínez, Emmanuel, Vegesna, Rahulsimham, Kim, Hoon, Torres-Garcia, Wandaliz, Treviño, Victor, Shen, Hui, Laird, Peter W., Levine, Douglas A., Carter, Scott L., Getz, Gad, Stemke-Hale, Katherine, Mills, Gordon B., Verhaak, Roel G.W.
Publicado em 2013

Absolute quantification of somatic DNA alterations in human cancer

Por Carter, Scott L., Cibulskis, Kristian, Helman, Elena, McKenna, Aaron, Shen, Hui, Zack, Travis, Laird, Peter W., Onofrio, Robert C., Winckler, Wendy, Weir, Barbara A., Beroukhim, Rameen, Pellman, David, Levine, Douglas A., Lander, Eric S., Meyerson, Matthew, Getz, Gad
Publicado no Nat Biotechnol (2012)

Pan-cancer patterns of somatic copy-number alteration

Por Zack, Travis I., Schumacher, Steven E., Carter, Scott L., Cherniack, Andrew D., Saksena, Gordon, Tabak, Barbara, Lawrence, Michael S., Zhang, Cheng-Zhong, Wala, Jeremiah, Mermel, Craig H., Sougnez, Carrie, Gabriel, Stacey B., Hernandez, Bryan, Shen, Hui, Laird, Peter W., Getz, Gad, Meyerson, Matthew, Beroukhim, Rameen
Publicado em 2013

Genetic and Clonal Dissection of Murine Small Cell Lung Carcinoma Progression by Genome Sequencing

Por McFadden, David G., Papagiannakopoulos, Thales, Taylor-Weiner, Amaro, Stewart, Chip, Carter, Scott L., Cibulskis, Kristian, Bhutkar, Arjun, McKenna, Aaron, Dooley, Alison, Vernon, Amanda, Sougnez, Carrie, Malstrom, Scott, Heimann, Megan, Park, Jennifer, Chen, Frances, Farago, Anna F., Dayton, Talya, Shefler, Erica, Gabriel, Stacey, Getz, Gad, Jacks, Tyler
Publicado em 2014

Widespread genetic heterogeneity in multiple myeloma: implications for targeted therapy

Por Lohr, Jens G., Stojanov, Petar, Carter, Scott L., Cruz-Gordillo, Peter, Lawrence, Michael S., Auclair, Daniel, Sougnez, Carrie, Knoechel, Birgit, Gould, Joshua, Saksena, Gordon, Cibulskis, Kristian, McKenna, Aaron, Chapman, Michael A., Straussman, Ravid, Levy, Joan, Perkins, Louise M., Keats, Jonathan J., Schumacher, Steven E., Rosenberg, Mara, Getz, Gad, Golub, Todd R.
Publicado no Cancer Cell (2014)

Response and Acquired Resistance to Everolimus in Anaplastic Thyroid Cancer

Por Wagle, Nikhil, Grabiner, Brian C., Van Allen, Eliezer M., Amin-Mansour, Ali, Taylor-Weiner, Amaro, Rosenberg, Mara, Gray, Nathanael, Barletta, Justine A., Guo, Yanan, Swanson, Scott J., Ruan, Daniel T., Hanna, Glenn J., Haddad, Robert I., Getz, Gad, Kwiatkowski, David J., Carter, Scott L., Sabatini, David M., Jänne, Pasi A., Garraway, Levi A., Lorch, Jochen H.
Publicado no N Engl J Med (2014)

Evolution and impact of subclonal mutations in chronic lymphocytic leukemia

Por Landau, Dan A., Carter, Scott L., Stojanov, Petar, McKenna, Aaron, Stevenson, Kristen, Lawrence, Michael S., Sougnez, Carrie, Stewart, Chip, Sivachenko, Andrey, Wang, Lili, Wan, Youzhong, Zhang, Wandi, Shukla, Sachet A., Vartanov, Alexander, Fernandes, Stacey M., Saksena, Gordon, Cibulskis, Kristian, Tesar, Bethany, Gabriel, Stacey, Hacohen, Nir, Meyerson, Matthew, Lander, Eric S., Neuberg, Donna, Brown, Jennifer R., Getz, Gad, Wu, Catherine J.
Publicado em 2013

Paired Exome Analysis of Barrett’s Esophagus and Adenocarcinoma

Por Stachler, Matthew D., Taylor-Weiner, Amaro, Peng, Shouyong, McKenna, Aaron, Agoston, Agoston T., Odze, Robert D., Davison, Jon M., Nason, Katie S., Loda, Massimo, Leshchiner, Ignaty, Stewart, Chip, Stojanov, Petar, Seepo, Sara, Lawrence, Michael S., Ferrer-Torres, Daysha, Lin, Jules, Chang, Andrew C., Gabriel, Stacey B., Lander, Eric S., Beer, David G., Getz, Gad, Carter, Scott L., Bass, Adam J.
Publicado no Nat Genet (2015)

Genomic heterogeneity and exceptional response to dual pathway inhibition in anaplastic thyroid cancer

Por Gibson, William J., Ruan, Daniel T., Paulson, Vera A., Barletta, Justine A., Hanna, Glenn J., Kraft, Stefan, Calles, Antonio, Nehs, Matthew A., Moore, Francis D., Taylor-Weiner, Amaro, Wala, Jeremiah, Zack, Travis I., Lee, Thomas C., Fennessy, Fiona M., Alexander, Erik K., Thomas, Tom, Janne, Pasi A., Garraway, Levi A., Carter, Scott L., Beroukhim, Rameen, Lorch, Jochen H., Van Allen, Eliezer M.
Publicado no Clin Cancer Res (2016)

MAP kinase pathway alterations in BRAF-mutant melanoma patients with acquired resistance to combined RAF/MEK inhibition

Por Wagle, Nikhil, Van Allen, Eliezer M., Treacy, Daniel J., Frederick, Dennie T., Cooper, Zachary A., Taylor-Weiner, Amaro, Rosenberg, Mara, Goetz, Eva M., Sullivan, Ryan J., Farlow, Deborah N., Friedrich, Dennis C., Anderka, Kristin, Perrin, Danielle, Johannessen, Cory M., McKenna, Aaron, Cibulskis, Kristian, Kryukov, Gregory, Hodis, Eran, Lawrence, Donald P., Fisher, Sheila, Getz, Gad, Gabriel, Stacey B., Carter, Scott L., Flaherty, Keith T., Wargo, Jennifer A., Garraway, Levi A.
Publicado em 2013

Long-term benefit of PD-L1 blockade in lung cancer associated with JAK3 activation

Por Van Allen, Eliezer M., Golay, Hadrien G., Liu, Yan, Koyama, Shohei, Wong, Karrie, Taylor-Weiner, Amaro, Giannakis, Marios, Harden, Maegan, Rojas-Rudilla, Vanesa, Chevalier, Aaron, Thai, Tran, Lydon, Christine, Mach, Stacy, Wong, Joshua A., Rabin, Alexandra R., Helmkamp, Joshua, Sholl, Lynette, Carter, Scott L., Oxnard, Geoffrey, Janne, Pasi, Getz, Gad, Lindeman, Neal, Hammerman, Peter S., Garraway, Levi A., Hodi, F. Stephen, Rodig, Scott, Dranoff, Glenn, Wong, Kwok-Kin, Barbie, David A.
Publicado no Cancer Immunol Res (2015)