ITD assembler: an algorithm for internal tandem duplication discovery from short-read sequencing data

Por Rustagi, Navin, Hampton, Oliver A, Li, Jie, Xi, Liu, Gibbs, Richard A., Plon, Sharon E., Kimmel, Marek, Wheeler, David A.
Publicado no BMC Bioinformatics (2016)

Long-Range Massively Parallel Mate Pair Sequencing Detects Distinct Mutations and Similar Patterns of Structural Mutability in Two Breast Cancer Cell Lines

Por Hampton, Oliver A., Miller, Christopher A., Koriabine, Maxim, Li, Jian, Hollander, Petra Den, Carbone, Lucia, Nefedov, Mikhail, Ten Hallers, Boudewijn F.H., Lee, Adrian V., De Jong, Pieter J., Milosavljevic, Aleksandar
Publicado em 2011

A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome

Por Hampton, Oliver A., Den Hollander, Petra, Miller, Christopher A., Delgado, David A., Li, Jian, Coarfa, Cristian, Harris, Ronald A., Richards, Stephen, Scherer, Steven E., Muzny, Donna M., Gibbs, Richard A., Lee, Adrian V., Milosavljevic, Aleksandar
Publicado em 2009

Initial Testing (Stage 1) of the PARP Inhibitor BMN 673 by the Pediatric Preclinical Testing Program: PALB2 Mutation Predicts Exceptional in Vivo Response to BMN 673

Por Smith, Malcolm A., Hampton, Oliver A., Reynolds, C. Patrick, Kang, Min H., Maris, John M., Gorlick, Richard, Kolb, E. Anders, Lock, Richard, Carol, Hernan, Keir, Stephen T., Wu, Jianrong, Kurmasheva, Raushan T., Wheeler, David A., Houghton, Peter J.
Publicado no Pediatr Blood Cancer (2014)

Alternative genetic mechanisms of BRAF activation in Langerhans cell histiocytosis

Por Chakraborty, Rikhia, Burke, Thomas M., Hampton, Oliver A., Zinn, Daniel J., Lim, Karen Phaik Har, Abhyankar, Harshal, Scull, Brooks, Kumar, Vijetha, Kakkar, Nipun, Wheeler, David A., Roy, Angshumoy, Poulikakos, Poulikos I., Merad, Miriam, McClain, Kenneth L., Parsons, D. Williams, Allen, Carl E.
Publicado no Blood (2016)

Genomic profiling of pediatric acute myeloid leukemia reveals a changing mutational landscape from disease diagnosis to relapse

Por Farrar, Jason E., Schuback, Heather L., Ries, Rhonda E., Wai, Daniel, Hampton, Oliver A., Trevino, Lisa R., Alonzo, Todd A., Guidry Auvil, Jaime M., Davidsen, Tanja M., Gesuwan, Patee, Hermida, Leandro, Muzny, Donna M., Dewal, Ninad, Rustagi, Navin, Lewis, Lora R., Gamis, Alan S., Wheeler, David A., Smith, Malcolm A., Gerhard, Daniela S., Meshinchi, Soheil
Publicado no Cancer Res (2016)

Recurrent internal tandem duplications of BCOR in clear cell sarcoma of the kidney

Por Roy, Angshumoy, Kumar, Vijetha, Zorman, Barry, Fang, Erica, Haines, Katherine M., Doddapaneni, HarshaVardhan, Hampton, Oliver A., White, Simon, Bavle, Abhishek A., Patel, Nimesh R., Eldin, Karen W., John Hicks, M., Rakheja, Dinesh, Leavey, Patrick J., Skapek, Stephen X., Amatruda, James F., Nuchtern, Jed G., Chintagumpala, Murali M., Wheeler, David A., Plon, Sharon E., Sumazin, Pavel, Parsons, D. Williams
Publicado no Nat Commun (2015)

Mutually exclusive recurrent somatic mutations in MAP2K1 and BRAF support a central role for ERK activation in LCH pathogenesis

Por Chakraborty, Rikhia, Hampton, Oliver A., Shen, Xiaoyun, Simko, Stephen J., Shih, Albert, Abhyankar, Harshal, Lim, Karen Phaik Har, Covington, Kyle R., Trevino, Lisa, Dewal, Ninad, Muzny, Donna M., Doddapaneni, Harshavardhan, Hu, Jianhong, Wang, Linghua, Lupo, Philip J., Hicks, M. John, Bonilla, Diana L., Dwyer, Karen C., Berres, Marie-Luise, Poulikakos, Poulikos I., Merad, Miriam, McClain, Kenneth L., Wheeler, David A., Allen, Carl E., Parsons, D. Williams
Publicado no Blood (2014)

MLLT1 YEATS domain mutations in clinically distinctive Favourable Histology Wilms tumours

Por Perlman, Elizabeth J., Gadd, Samantha, Arold, Stefan T., Radhakrishnan, Anand, Gerhard, Daniela S., Jennings, Lawrence, Huff, Vicki, Guidry Auvil, Jaime M., Davidsen, Tanja M., Dome, Jeffrey S., Meerzaman, Daoud, Hsu, Chih Hao, Nguyen, Cu, Anderson, James, Ma, Yussanne, Mungall, Andrew J., Moore, Richard A., Marra, Marco A., Mullighan, Charles G., Ma, Jing, Wheeler, David A., Hampton, Oliver A., Gastier-Foster, Julie M., Ross, Nicole, Smith, Malcolm A.
Publicado no Nat Commun (2015)

Assessing structural variation in a personal genome—towards a human reference diploid genome

Por English, Adam C, Salerno, William J, Hampton, Oliver A, Gonzaga-Jauregui, Claudia, Ambreth, Shruthi, Ritter, Deborah I, Beck, Christine R, Davis, Caleb F, Dahdouli, Mahmoud, Ma, Singer, Carroll, Andrew, Veeraraghavan, Narayanan, Bruestle, Jeremy, Drees, Becky, Hastie, Alex, Lam, Ernest T, White, Simon, Mishra, Pamela, Wang, Min, Han, Yi, Zhang, Feng, Stankiewicz, Pawel, Wheeler, David A, Reid, Jeffrey G, Muzny, Donna M, Rogers, Jeffrey, Sabo, Aniko, Worley, Kim C, Lupski, James R, Boerwinkle, Eric, Gibbs, Richard A
Publicado no BMC Genomics (2015)

Non-malignant respiratory epithelial cells preferentially proliferate from resected non-small cell lung cancer specimens cultured under conditionally reprogrammed conditions

Por Gao, Boning, Huang, Chunxian, Kernstine, Kemp, Pelekanou, Vasiliki, Kluger, Yuval, Jiang, Tingting, Peters-Hall, Jennifer R, Coquelin, Melissa, Girard, Luc, Zhang, Wei, Huffman, Kenneth, Oliver, Dwight, Kinose, Fumi, Haura, Eric, Teer, Jamie K, Rix, Uwe, Le, Anh T, Aisner, Dara L, Varella-Garcia, Marileila, Doebele, Robert C, Covington, Kyle R, Hampton, Oliver A, Doddapaneni, Harsha V, Jayaseelan, Joy C, Hu, Jianhong, Wheeler, David A, Shay, Jerry W, Rimm, David L, Gazdar, Adi, Minna, John D
Publicado no Oncotarget (2016)

Rise and fall of subclones from diagnosis to relapse in pediatric B-acute lymphoblastic leukaemia

Por Ma, Xiaotu, Edmonson, Michael, Yergeau, Donald, Muzny, Donna M., Hampton, Oliver A., Rusch, Michael, Song, Guangchun, Easton, John, Harvey, Richard C., Wheeler, David A., Ma, Jing, Doddapaneni, HarshaVardhan, Vadodaria, Bhavin, Wu, Gang, Nagahawatte, Panduka, Carroll, William L., Chen, I-Ming, Gastier-Foster, Julie M., Relling, Mary V., Smith, Malcolm A., Devidas, Meenakshi, Auvil, Jaime M. Guidry, Downing, James R., Loh, Mignon L., Willman, Cheryl L., Gerhard, Daniela S., Mullighan, Charles G., Hunger, Stephen P., Zhang, Jinghui
Publicado no Nat Commun (2015)

Recurrent DGCR8, DROSHA, and SIX Homeodomain Mutations in Favorable Histology Wilms Tumors

Por Walz, Amy L., Ooms, Ariadne, Gadd, Samantha, Gerhard, Daniela S., Smith, Malcolm A., Guidry Auvil, Jamie M., Meerzaman, Daoud, Chen, Qing-Rong, Hsu, Chih Hao, Yan, Chunhua, Nguyen, Cu, Hu, Ying, Bowlby, Reanne, Brooks, Denise, Ma, Yussanne, Mungall, Andrew J., Moore, Richard A., Schein, Jacqueline, Marra, Marco A., Huff, Vicki, Dome, Jeffrey S., Chi, Yueh-Yun, Mullighan, Charles G., Ma, Jing, Wheeler, David A., Hampton, Oliver A., Jafari, Nadereh, Ross, Nicole, Gastier-Foster, Julie M., Perlman, Elizabeth J.
Publicado no Cancer Cell (2015)

Significance of TP53 Mutation in Wilms Tumors with Diffuse Anaplasia: A Report from the Children’s Oncology Group

Por Ooms, Ariadne H.A.G., Gadd, Samantha, Gerhard, Daniela S., Smith, Malcolm A., Guidry Auvil, Jaime M., Meerzaman, Daoud, Chen, Qing-Rong, Hsu, Chih Hao, Yan, Chunhua, Nguyen, Cu, Hu, Ying, Ma, Yussanne, Zong, Zusheng, Mungall, Andrew J., Moore, Richard A., Marra, Marco A., Huff, Vicki, Dome, Jeffrey S., Chi, Yueh-Yun, Tian, Jing, Geller, James I., Mullighan, Charles G., Ma, Jing, Wheeler, David A., Hampton, Oliver A., Walz, Amy L., van den Heuvel-Eibrink, Marry M., de Krijger, Ronald R., Ross, Nicole, Gastier-Foster, Julie M., Perlman, Elizabeth J.
Publicado no Clin Cancer Res (2016)

Ampullary cancers harbor ELF3 tumor suppressor gene mutations and exhibit frequent WNT dysregulation

Por Gingras, Marie-Claude, Covington, Kyle R., Chang, David K., Donehower, Lawrence A., Gill, Anthony J., Ittmann, Michael M., Creighton, Chad J., Johns, Amber L., Shinbrot, Eve, Dewal, Ninad, Fisher, William E., Pilarsky, Christian, Grützmann, Robert, Overman, Michael J., Jamieson, Nigel B., Van Buren, George, Drummond, Jennifer, Walker, Kimberly, Hampton, Oliver A., Xi, Liu, Muzny, Donna M., Doddapaneni, Harsha, Lee, Sandra L., Bellair, Michelle, Hu, Jianhong, Han, Yi, Dinh, Huyen H., Dahdouli, Mike, Samra, Jaswinder S., Bailey, Peter, Waddell, Nicola, Pearson, John V., Harliwong, Ivon, Wang, Huamin, Aust, Daniela, Oien, Karin A., Hruban, Ralph H., Hodges, Sally E., McElhany, Amy, Saengboonmee, Charupong, Duthie, Fraser R., Grimmond, Sean M., Biankin, Andrew V., Wheeler, David A., Gibbs, Richard A.
Publicado no Cell Rep (2016)