ITD assembler: an algorithm for internal tandem duplication discovery from short-read sequencing data

Tekijä Rustagi, Navin, Hampton, Oliver A, Li, Jie, Xi, Liu, Gibbs, Richard A., Plon, Sharon E., Kimmel, Marek, Wheeler, David A.
Julkaisussa BMC Bioinformatics (2016)

DACH1 mutation frequency in endometrial cancer is associated with high tumor mutation burden

Tekijä Riggs, McKayla J., Lin, Nan, Wang, Chi, Piecoro, Dava W., Miller, Rachel W., Hampton, Oliver A., Rao, Mahadev, Ueland, Frederick R., Kolesar, Jill M.
Julkaisussa PLoS One (2020)

SVachra: a tool to identify genomic structural variation in mate pair sequencing data containing inward and outward facing reads

Tekijä Hampton, Oliver A., English, Adam C., Wang, Mark, Salerno, William J., Liu, Yue, Muzny, Donna M., Han, Yi, Wheeler, David A., Worley, Kim C., Lupski, James R., Gibbs, Richard A.
Julkaisussa BMC Genomics (2017)

Long-Range Massively Parallel Mate Pair Sequencing Detects Distinct Mutations and Similar Patterns of Structural Mutability in Two Breast Cancer Cell Lines

Tekijä Hampton, Oliver A., Miller, Christopher A., Koriabine, Maxim, Li, Jian, Hollander, Petra Den, Carbone, Lucia, Nefedov, Mikhail, Ten Hallers, Boudewijn F.H., Lee, Adrian V., De Jong, Pieter J., Milosavljevic, Aleksandar
Julkaistu 2011

A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome

Tekijä Hampton, Oliver A., Den Hollander, Petra, Miller, Christopher A., Delgado, David A., Li, Jian, Coarfa, Cristian, Harris, Ronald A., Richards, Stephen, Scherer, Steven E., Muzny, Donna M., Gibbs, Richard A., Lee, Adrian V., Milosavljevic, Aleksandar
Julkaistu 2009

Initial Testing (Stage 1) of the PARP Inhibitor BMN 673 by the Pediatric Preclinical Testing Program: PALB2 Mutation Predicts Exceptional in Vivo Response to BMN 673

Tekijä Smith, Malcolm A., Hampton, Oliver A., Reynolds, C. Patrick, Kang, Min H., Maris, John M., Gorlick, Richard, Kolb, E. Anders, Lock, Richard, Carol, Hernan, Keir, Stephen T., Wu, Jianrong, Kurmasheva, Raushan T., Wheeler, David A., Houghton, Peter J.
Julkaisussa Pediatr Blood Cancer (2014)

Alternative genetic mechanisms of BRAF activation in Langerhans cell histiocytosis

Tekijä Chakraborty, Rikhia, Burke, Thomas M., Hampton, Oliver A., Zinn, Daniel J., Lim, Karen Phaik Har, Abhyankar, Harshal, Scull, Brooks, Kumar, Vijetha, Kakkar, Nipun, Wheeler, David A., Roy, Angshumoy, Poulikakos, Poulikos I., Merad, Miriam, McClain, Kenneth L., Parsons, D. Williams, Allen, Carl E.
Julkaisussa Blood (2016)

Activating MAPK1 (ERK2) mutation in an aggressive case of disseminated juvenile xanthogranuloma

Tekijä Chakraborty, Rikhia, Hampton, Oliver A., Abhyankar, Harshal, Zinn, Daniel J., Grimes, Amanda, Skull, Brooks, Eckstein, Olive, Mahmood, Nadia, Wheeler, David A., Lopez-Terrada, Dolores, Peters, Tricia L., Hicks, John M., Elghetany, Tarek, Krance, Robert, Poulikakos, Poulikos I., Merad, Miriam, McClain, Kenneth L., Allen, Carl E., Parsons, Donald W.
Julkaisussa Oncotarget (2017)

Genomic profiling of pediatric acute myeloid leukemia reveals a changing mutational landscape from disease diagnosis to relapse

Tekijä Farrar, Jason E., Schuback, Heather L., Ries, Rhonda E., Wai, Daniel, Hampton, Oliver A., Trevino, Lisa R., Alonzo, Todd A., Guidry Auvil, Jaime M., Davidsen, Tanja M., Gesuwan, Patee, Hermida, Leandro, Muzny, Donna M., Dewal, Ninad, Rustagi, Navin, Lewis, Lora R., Gamis, Alan S., Wheeler, David A., Smith, Malcolm A., Gerhard, Daniela S., Meshinchi, Soheil
Julkaisussa Cancer Res (2016)

Recurrent internal tandem duplications of BCOR in clear cell sarcoma of the kidney

Tekijä Roy, Angshumoy, Kumar, Vijetha, Zorman, Barry, Fang, Erica, Haines, Katherine M., Doddapaneni, HarshaVardhan, Hampton, Oliver A., White, Simon, Bavle, Abhishek A., Patel, Nimesh R., Eldin, Karen W., John Hicks, M., Rakheja, Dinesh, Leavey, Patrick J., Skapek, Stephen X., Amatruda, James F., Nuchtern, Jed G., Chintagumpala, Murali M., Wheeler, David A., Plon, Sharon E., Sumazin, Pavel, Parsons, D. Williams
Julkaisussa Nat Commun (2015)

Mutually exclusive recurrent somatic mutations in MAP2K1 and BRAF support a central role for ERK activation in LCH pathogenesis

Tekijä Chakraborty, Rikhia, Hampton, Oliver A., Shen, Xiaoyun, Simko, Stephen J., Shih, Albert, Abhyankar, Harshal, Lim, Karen Phaik Har, Covington, Kyle R., Trevino, Lisa, Dewal, Ninad, Muzny, Donna M., Doddapaneni, Harshavardhan, Hu, Jianhong, Wang, Linghua, Lupo, Philip J., Hicks, M. John, Bonilla, Diana L., Dwyer, Karen C., Berres, Marie-Luise, Poulikakos, Poulikos I., Merad, Miriam, McClain, Kenneth L., Wheeler, David A., Allen, Carl E., Parsons, D. Williams
Julkaisussa Blood (2014)

MLLT1 YEATS domain mutations in clinically distinctive Favourable Histology Wilms tumours

Tekijä Perlman, Elizabeth J., Gadd, Samantha, Arold, Stefan T., Radhakrishnan, Anand, Gerhard, Daniela S., Jennings, Lawrence, Huff, Vicki, Guidry Auvil, Jaime M., Davidsen, Tanja M., Dome, Jeffrey S., Meerzaman, Daoud, Hsu, Chih Hao, Nguyen, Cu, Anderson, James, Ma, Yussanne, Mungall, Andrew J., Moore, Richard A., Marra, Marco A., Mullighan, Charles G., Ma, Jing, Wheeler, David A., Hampton, Oliver A., Gastier-Foster, Julie M., Ross, Nicole, Smith, Malcolm A.
Julkaisussa Nat Commun (2015)

Assessing structural variation in a personal genome—towards a human reference diploid genome

Tekijä English, Adam C, Salerno, William J, Hampton, Oliver A, Gonzaga-Jauregui, Claudia, Ambreth, Shruthi, Ritter, Deborah I, Beck, Christine R, Davis, Caleb F, Dahdouli, Mahmoud, Ma, Singer, Carroll, Andrew, Veeraraghavan, Narayanan, Bruestle, Jeremy, Drees, Becky, Hastie, Alex, Lam, Ernest T, White, Simon, Mishra, Pamela, Wang, Min, Han, Yi, Zhang, Feng, Stankiewicz, Pawel, Wheeler, David A, Reid, Jeffrey G, Muzny, Donna M, Rogers, Jeffrey, Sabo, Aniko, Worley, Kim C, Lupski, James R, Boerwinkle, Eric, Gibbs, Richard A
Julkaisussa BMC Genomics (2015)

Non-malignant respiratory epithelial cells preferentially proliferate from resected non-small cell lung cancer specimens cultured under conditionally reprogrammed conditions

Tekijä Gao, Boning, Huang, Chunxian, Kernstine, Kemp, Pelekanou, Vasiliki, Kluger, Yuval, Jiang, Tingting, Peters-Hall, Jennifer R, Coquelin, Melissa, Girard, Luc, Zhang, Wei, Huffman, Kenneth, Oliver, Dwight, Kinose, Fumi, Haura, Eric, Teer, Jamie K, Rix, Uwe, Le, Anh T, Aisner, Dara L, Varella-Garcia, Marileila, Doebele, Robert C, Covington, Kyle R, Hampton, Oliver A, Doddapaneni, Harsha V, Jayaseelan, Joy C, Hu, Jianhong, Wheeler, David A, Shay, Jerry W, Rimm, David L, Gazdar, Adi, Minna, John D
Julkaisussa Oncotarget (2016)

Rise and fall of subclones from diagnosis to relapse in pediatric B-acute lymphoblastic leukaemia

Tekijä Ma, Xiaotu, Edmonson, Michael, Yergeau, Donald, Muzny, Donna M., Hampton, Oliver A., Rusch, Michael, Song, Guangchun, Easton, John, Harvey, Richard C., Wheeler, David A., Ma, Jing, Doddapaneni, HarshaVardhan, Vadodaria, Bhavin, Wu, Gang, Nagahawatte, Panduka, Carroll, William L., Chen, I-Ming, Gastier-Foster, Julie M., Relling, Mary V., Smith, Malcolm A., Devidas, Meenakshi, Auvil, Jaime M. Guidry, Downing, James R., Loh, Mignon L., Willman, Cheryl L., Gerhard, Daniela S., Mullighan, Charles G., Hunger, Stephen P., Zhang, Jinghui
Julkaisussa Nat Commun (2015)

Recurrent DGCR8, DROSHA, and SIX Homeodomain Mutations in Favorable Histology Wilms Tumors

Tekijä Walz, Amy L., Ooms, Ariadne, Gadd, Samantha, Gerhard, Daniela S., Smith, Malcolm A., Guidry Auvil, Jamie M., Meerzaman, Daoud, Chen, Qing-Rong, Hsu, Chih Hao, Yan, Chunhua, Nguyen, Cu, Hu, Ying, Bowlby, Reanne, Brooks, Denise, Ma, Yussanne, Mungall, Andrew J., Moore, Richard A., Schein, Jacqueline, Marra, Marco A., Huff, Vicki, Dome, Jeffrey S., Chi, Yueh-Yun, Mullighan, Charles G., Ma, Jing, Wheeler, David A., Hampton, Oliver A., Jafari, Nadereh, Ross, Nicole, Gastier-Foster, Julie M., Perlman, Elizabeth J.
Julkaisussa Cancer Cell (2015)

Novel patient-derived xenograft and cell line models for therapeutic testing of pediatric liver cancer

Tekijä Bissig-Choisat, Beatrice, Kettlun-Leyton, Claudia, Legras, Xavier D., Zorman, Barry, Barzi, Mercedes, Chen, Leon L., Amin, Mansi D., Huang, Yung-Hsin, Pautler, Robia G., Hampton, Oliver A., Prakash, Masand M., Yang, Diane, Borowiak, Malgorzata, Muzny, Donna, Doddapaneni, Harsha Vardhan, Hu, Jianhong, Shi, Yan, Gaber, M. Waleed, Hicks, M. John, Thompson, Patrick A., Lu, Yiling, Mills, Gordon B., Finegold, Milton, Goss, John A., Parsons, D. Williams, Vasudevan, Sanjeev A., Sumazin, Pavel, López-Terrada, Dolores, Bissig, Karl-Dimiter
Julkaisussa J Hepatol (2016)

A Children's Oncology Group and TARGET Initiative Exploring the Genetic Landscape of Wilms Tumor

Tekijä Gadd, Samantha, Huff, Vicki, Walz, Amy L., Ooms, Ariadne H.A.G., Armstrong, Amy E., Gerhard, Daniela S., Smith, Malcolm A., Guidry Auvil, Jaime M., Meerzaman, Daoud, Chen, Qing-Rong, Hsu, Chih Hao, Yan, Chunhua, Nguyen, Cu, Hu, Ying, Hermida, Leandro C., Davidsen, Tanja, Gesuwan, Patee, Ma, Yussanne, Zong, Zusheng, Mungall, Andrew J., Moore, Richard A., Marra, Marco A., Dome, Jeffrey S., Mullighan, Charles G., Ma, Jing, Wheeler, David A., Hampton, Oliver A., Ross, Nicole, Gastier-Foster, Julie M., Arold, Stefan T., Perlman, Elizabeth J.
Julkaisussa Nat Genet (2017)

Significance of TP53 Mutation in Wilms Tumors with Diffuse Anaplasia: A Report from the Children’s Oncology Group

Tekijä Ooms, Ariadne H.A.G., Gadd, Samantha, Gerhard, Daniela S., Smith, Malcolm A., Guidry Auvil, Jaime M., Meerzaman, Daoud, Chen, Qing-Rong, Hsu, Chih Hao, Yan, Chunhua, Nguyen, Cu, Hu, Ying, Ma, Yussanne, Zong, Zusheng, Mungall, Andrew J., Moore, Richard A., Marra, Marco A., Huff, Vicki, Dome, Jeffrey S., Chi, Yueh-Yun, Tian, Jing, Geller, James I., Mullighan, Charles G., Ma, Jing, Wheeler, David A., Hampton, Oliver A., Walz, Amy L., van den Heuvel-Eibrink, Marry M., de Krijger, Ronald R., Ross, Nicole, Gastier-Foster, Julie M., Perlman, Elizabeth J.
Julkaisussa Clin Cancer Res (2016)

Ampullary cancers harbor ELF3 tumor suppressor gene mutations and exhibit frequent WNT dysregulation

Tekijä Gingras, Marie-Claude, Covington, Kyle R., Chang, David K., Donehower, Lawrence A., Gill, Anthony J., Ittmann, Michael M., Creighton, Chad J., Johns, Amber L., Shinbrot, Eve, Dewal, Ninad, Fisher, William E., Pilarsky, Christian, Grützmann, Robert, Overman, Michael J., Jamieson, Nigel B., Van Buren, George, Drummond, Jennifer, Walker, Kimberly, Hampton, Oliver A., Xi, Liu, Muzny, Donna M., Doddapaneni, Harsha, Lee, Sandra L., Bellair, Michelle, Hu, Jianhong, Han, Yi, Dinh, Huyen H., Dahdouli, Mike, Samra, Jaswinder S., Bailey, Peter, Waddell, Nicola, Pearson, John V., Harliwong, Ivon, Wang, Huamin, Aust, Daniela, Oien, Karin A., Hruban, Ralph H., Hodges, Sally E., McElhany, Amy, Saengboonmee, Charupong, Duthie, Fraser R., Grimmond, Sean M., Biankin, Andrew V., Wheeler, David A., Gibbs, Richard A.
Julkaisussa Cell Rep (2016)