A Comprehensive Infrastructure for Big Data in Cancer Research: Accelerating Cancer Research and Precision Medicine

Tekijä Hinkson, Izumi V., Davidsen, Tanja M., Klemm, Juli D., Chandramouliswaran, Ishwar, Kerlavage, Anthony R., Kibbe, Warren A.
Julkaisussa Front Cell Dev Biol (2017)

Corrigendum: A Comprehensive Infrastructure for Big Data in Cancer Research: Accelerating Cancer Research and Precision Medicine

Tekijä Hinkson, Izumi V., Davidsen, Tanja M., Klemm, Juli D., Chandramouliswaran, Ishwar, Kerlavage, Anthony R., Kibbe, Warren A.
Julkaisussa Front Cell Dev Biol (2017)

Genome Sequence of Avery's Virulent Serotype 2 Strain D39 of Streptococcus pneumoniae and Comparison with That of Unencapsulated Laboratory Strain R6

Tekijä Lanie, Joel A., Ng, Wai-Leung, Kazmierczak, Krystyna M., Andrzejewski, Tiffany M., Davidsen, Tanja M., Wayne, Kyle J., Tettelin, Hervé, Glass, John I., Winkler, Malcolm E.
Julkaistu 2007

Genomic profiling of pediatric acute myeloid leukemia reveals a changing mutational landscape from disease diagnosis to relapse

Tekijä Farrar, Jason E., Schuback, Heather L., Ries, Rhonda E., Wai, Daniel, Hampton, Oliver A., Trevino, Lisa R., Alonzo, Todd A., Guidry Auvil, Jaime M., Davidsen, Tanja M., Gesuwan, Patee, Hermida, Leandro, Muzny, Donna M., Dewal, Ninad, Rustagi, Navin, Lewis, Lora R., Gamis, Alan S., Wheeler, David A., Smith, Malcolm A., Gerhard, Daniela S., Meshinchi, Soheil
Julkaisussa Cancer Res (2016)

Complete genome sequence of the Q-fever pathogen Coxiella burnetii

Tekijä Seshadri, Rekha, Paulsen, Ian T., Eisen, Jonathan A., Read, Timothy D., Nelson, Karen E., Nelson, William C., Ward, Naomi L., Tettelin, Hervé, Davidsen, Tanja M., Beanan, Maureen J., Deboy, Robert T., Daugherty, Sean C., Brinkac, Lauren M., Madupu, Ramana, Dodson, Robert J., Khouri, Hoda M., Lee, Kathy H., Carty, Heather A., Scanlan, David, Heinzen, Robert A., Thompson, Herbert A., Samuel, James E., Fraser, Claire M., Heidelberg, John F.
Julkaistu 2003

MLLT1 YEATS domain mutations in clinically distinctive Favourable Histology Wilms tumours

Tekijä Perlman, Elizabeth J., Gadd, Samantha, Arold, Stefan T., Radhakrishnan, Anand, Gerhard, Daniela S., Jennings, Lawrence, Huff, Vicki, Guidry Auvil, Jaime M., Davidsen, Tanja M., Dome, Jeffrey S., Meerzaman, Daoud, Hsu, Chih Hao, Nguyen, Cu, Anderson, James, Ma, Yussanne, Mungall, Andrew J., Moore, Richard A., Marra, Marco A., Mullighan, Charles G., Ma, Jing, Wheeler, David A., Hampton, Oliver A., Gastier-Foster, Julie M., Ross, Nicole, Smith, Malcolm A.
Julkaisussa Nat Commun (2015)

CSF3R mutations have a high degree of overlap with CEBPA mutations in pediatric AML

Tekijä Maxson, Julia E., Ries, Rhonda E., Wang, Yi-Cheng, Gerbing, Robert B., Kolb, E. Anders, Thompson, Sarah L., Guidry Auvil, Jaime M., Marra, Marco A., Ma, Yussanne, Zong, Zusheng, Mungall, Andrew J., Moore, Richard, Long, William, Gesuwan, Patee, Davidsen, Tanja M., Hermida, Leandro C., Hughes, Seamus B., Farrar, Jason E., Radich, Jerald P., Smith, Malcolm A., Gerhard, Daniela S., Gamis, Alan S., Alonzo, Todd A., Meshinchi, Soheil
Julkaisussa Blood (2016)

The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses

Tekijä Methé, Barbara A., Nelson, Karen E., Deming, Jody W., Momen, Bahram, Melamud, Eugene, Zhang, Xijun, Moult, John, Madupu, Ramana, Nelson, William C., Dodson, Robert J., Brinkac, Lauren M., Daugherty, Sean C., Durkin, Anthony S., DeBoy, Robert T., Kolonay, James F., Sullivan, Steven A., Zhou, Liwei, Davidsen, Tanja M., Wu, Martin, Huston, Adrienne L., Lewis, Matthew, Weaver, Bruce, Weidman, Janice F., Khouri, Hoda, Utterback, Terry R., Feldblyum, Tamara V., Fraser, Claire M.
Julkaistu 2005

The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions

Tekijä Bolouri, Hamid, Farrar, Jason E, Triche, Timothy, Ries, Rhonda E, Lim, Emilia L, Alonzo, Todd A, Ma, Yussanne, Moore, Richard, Mungall, Andrew J, Marra, Marco A, Zhang, Jinghui, Ma, Xiaotu, Liu, Yu, Liu, Yanling, Auvil, Jaime M Guidry, Davidsen, Tanja M, Gesuwan, Patee, Hermida, Leandro C, Salhia, Bodour, Capone, Stephen, Ramsingh, Giridharan, Zwaan, Christian Michel, Noort, Sanne, Piccolo, Stephen R, Kolb, E Anders, Gamis, Alan S, Smith, Malcolm A, Gerhard, Daniela S, Meshinchi, Soheil
Julkaisussa Nat Med (2017)

Publisher Correction: The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions

Tekijä Bolouri, Hamid, Farrar, Jason E, Triche, Timothy, Ries, Rhonda E, Lim, Emilia L, Alonzo, Todd A, Ma, Yussanne, Moore, Richard, Mungall, Andrew J, Marra, Marco A, Zhang, Jinghui, Ma, Xiaotu, Liu, Yu, Liu, Yanling, Auvil, Jaime M Guidry, Davidsen, Tanja M, Gesuwan, Patee, Hermida, Leandro C, Salhia, Bodour, Capone, Stephen, Ramsingh, Giridharan, Zwaan, Christian Michel, Noort, Sanne, Piccolo, Stephen R, Kolb, E Anders, Gamis, Alan S, Smith, Malcolm A, Gerhard, Daniela S, Meshinchi, Soheil
Julkaisussa Nat Med (2019)

Comparative Genomic Evidence for a Close Relationship between the Dimorphic Prosthecate Bacteria Hyphomonas neptunium and Caulobacter crescentus

Tekijä Badger, Jonathan H., Hoover, Timothy R., Brun, Yves V., Weiner, Ronald M., Laub, Michael T., Alexandre, Gladys, Mrázek, Jan, Ren, Qinghu, Paulsen, Ian T., Nelson, Karen E., Khouri, Hoda M., Radune, Diana, Sosa, Julia, Dodson, Robert J., Sullivan, Steven A., Rosovitz, M. J., Madupu, Ramana, Brinkac, Lauren M., Durkin, A. Scott, Daugherty, Sean C., Kothari, Sagar P., Giglio, Michelle Gwinn, Zhou, Liwei, Haft, Daniel H., Selengut, Jeremy D., Davidsen, Tanja M., Yang, Qi, Zafar, Nikhat, Ward, Naomi L.
Julkaistu 2006

Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes

Tekijä Seshadri, Rekha, Myers, Garry S. A., Tettelin, Hervé, Eisen, Jonathan A., Heidelberg, John F., Dodson, Robert J., Davidsen, Tanja M., DeBoy, Robert T., Fouts, Derrick E., Haft, Dan H., Selengut, Jeremy, Ren, Qinghu, Brinkac, Lauren M., Madupu, Ramana, Kolonay, Jamie, Durkin, Scott A., Daugherty, Sean C., Shetty, Jyoti, Shvartsbeyn, Alla, Gebregeorgis, Elizabeth, Geer, Keita, Tsegaye, Getahun, Malek, Joel, Ayodeji, Bola, Shatsman, Sofiya, McLeod, Michael P., Šmajs, David, Howell, Jerrilyn K., Pal, Sangita, Amin, Anita, Vashisth, Pankaj, McNeill, Thomas Z., Xiang, Qin, Sodergren, Erica, Baca, Ernesto, Weinstock, George M., Norris, Steven J., Fraser, Claire M., Paulsen, Ian T.
Julkaistu 2004

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

Tekijä Ward, Naomi L., Challacombe, Jean F., Janssen, Peter H., Henrissat, Bernard, Coutinho, Pedro M., Wu, Martin, Xie, Gary, Haft, Daniel H., Sait, Michelle, Badger, Jonathan, Barabote, Ravi D., Bradley, Brent, Brettin, Thomas S., Brinkac, Lauren M., Bruce, David, Creasy, Todd, Daugherty, Sean C., Davidsen, Tanja M., DeBoy, Robert T., Detter, J. Chris, Dodson, Robert J., Durkin, A. Scott, Ganapathy, Anuradha, Gwinn-Giglio, Michelle, Han, Cliff S., Khouri, Hoda, Kiss, Hajnalka, Kothari, Sagar P., Madupu, Ramana, Nelson, Karen E., Nelson, William C., Paulsen, Ian, Penn, Kevin, Ren, Qinghu, Rosovitz, M. J., Selengut, Jeremy D., Shrivastava, Susmita, Sullivan, Steven A., Tapia, Roxanne, Thompson, L. Sue, Watkins, Kisha L., Yang, Qi, Yu, Chunhui, Zafar, Nikhat, Zhou, Liwei, Kuske, Cheryl R.
Julkaistu 2009

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial “pan-genome”

Tekijä Tettelin, Hervé, Masignani, Vega, Cieslewicz, Michael J., Donati, Claudio, Medini, Duccio, Ward, Naomi L., Angiuoli, Samuel V., Crabtree, Jonathan, Jones, Amanda L., Durkin, A. Scott, DeBoy, Robert T., Davidsen, Tanja M., Mora, Marirosa, Scarselli, Maria, Margarit y Ros, Immaculada, Peterson, Jeremy D., Hauser, Christopher R., Sundaram, Jaideep P., Nelson, William C., Madupu, Ramana, Brinkac, Lauren M., Dodson, Robert J., Rosovitz, Mary J., Sullivan, Steven A., Daugherty, Sean C., Haft, Daniel H., Selengut, Jeremy, Gwinn, Michelle L., Zhou, Liwei, Zafar, Nikhat, Khouri, Hoda, Radune, Diana, Dimitrov, George, Watkins, Kisha, O'Connor, Kevin J. B., Smith, Shannon, Utterback, Teresa R., White, Owen, Rubens, Craig E., Grandi, Guido, Madoff, Lawrence C., Kasper, Dennis L., Telford, John L., Wessels, Michael R., Rappuoli, Rino, Fraser, Claire M.
Julkaistu 2005

Genome-wide discovery of somatic coding and noncoding mutations in pediatric endemic and sporadic Burkitt lymphoma

Tekijä Grande, Bruno M., Gerhard, Daniela S., Jiang, Aixiang, Griner, Nicholas B., Abramson, Jeremy S., Alexander, Thomas B., Allen, Hilary, Ayers, Leona W., Bethony, Jeffrey M., Bhatia, Kishor, Bowen, Jay, Casper, Corey, Choi, John Kim, Culibrk, Luka, Davidsen, Tanja M., Dyer, Maureen A., Gastier-Foster, Julie M., Gesuwan, Patee, Greiner, Timothy C., Gross, Thomas G., Hanf, Benjamin, Harris, Nancy Lee, He, Yiwen, Irvin, John D., Jaffe, Elaine S., Jones, Steven J. M., Kerchan, Patrick, Knoetze, Nicole, Leal, Fabio E., Lichtenberg, Tara M., Ma, Yussanne, Martin, Jean Paul, Martin, Marie-Reine, Mbulaiteye, Sam M., Mullighan, Charles G., Mungall, Andrew J., Namirembe, Constance, Novik, Karen, Noy, Ariela, Ogwang, Martin D., Omoding, Abraham, Orem, Jackson, Reynolds, Steven J., Rushton, Christopher K., Sandlund, John T., Schmitz, Roland, Taylor, Cynthia, Wilson, Wyndham H., Wright, George W., Zhao, Eric Y., Marra, Marco A., Morin, Ryan D., Staudt, Louis M.
Julkaisussa Blood (2019)

The genetic basis and cell of origin of mixed phenotype acute leukaemia

Tekijä Alexander, Thomas B., Gu, Zhaohui, Iacobucci, Ilaria, Dickerson, Kirsten, Choi, John K., Xu, Beisi, Payne-Turner, Debbie, Yoshihara, Hiroki, Loh, Mignon L., Horan, John, Buldini, Barbara, Basso, Giuseppe, Elitzur, Sarah, de Haas, Valerie, Zwaan, C. Michel, Yeoh, Allen, Reinhardt, Dirk, Tomizawa, Daisuke, Kiyokawa, Nobutaka, Lammens, Tim, De Moerloose, Barbara, Catchpoole, Daniel, Hori, Hiroki, Moorman, Anthony, Moore, Andrew S., Hrusak, Ondrej, Meshinchi, Soheil, Orgel, Etan, Devidas, Meenakshi, Borowitz, Michael, Wood, Brent, Heerema, Nyla A., Carrol, Andrew, Yang, Yung-Li, Smith, Malcolm A., Davidsen, Tanja M., Hermida, Leandro C., Gesuwan, Patee, Marra, Marco A., Ma, Yussanne, Mungall, Andrew J., Moore, Richard A., Jones, Steven J. M., Valentine, Marcus, Janke, Laura J., Rubnitz, Jeffrey E., Pui, Ching-Hon, Ding, Liang, Liu, Yu, Zhang, Jinghui, Nichols, Kim E., Downing, James R., Cao, Xueyuan, Shi, Lei, Pounds, Stanley, Newman, Scott, Pei, Deqing, Guidry Auvil, Jaime M., Gerhard, Daniela S., Hunger, Stephen P., Inaba, Hiroto, Mullighan, Charles G.
Julkaisussa Nature (2018)