Protein Homology Network Families Reveal Step-Wise Diversification of Type III and Type IV Secretion Systems

Por Medini, Duccio, Covacci, Antonello, Donati, Claudio
Publicado em 2006

riboFrame: An Improved Method for Microbial Taxonomy Profiling from Non-Targeted Metagenomics

Por Ramazzotti, Matteo, Berná, Luisa, Donati, Claudio, Cavalieri, Duccio
Publicado no Front Genet (2015)

Explaining Diversity in Metagenomic Datasets by Phylogenetic-Based Feature Weighting

Por Albanese, Davide, De Filippo, Carlotta, Cavalieri, Duccio, Donati, Claudio
Publicado no PLoS Comput Biol (2015)

Pilus Operon Evolution in Streptococcus pneumoniae Is Driven by Positive Selection and Recombination

Por Muzzi, Alessandro, Moschioni, Monica, Covacci, Antonello, Rappuoli, Rino, Donati, Claudio
Publicado em 2008

A Novel Computational Method Identifies Intra- and Inter-Species Recombination Events in Staphylococcus aureus and Streptococcus pneumoniae

Por Sanguinetti, Lisa, Toti, Simona, Reguzzi, Valerio, Bagnoli, Fabio, Donati, Claudio
Publicado em 2012

Conservation of Meningococcal Antigens in the Genus Neisseria

Por Muzzi, Alessandro, Mora, Marirosa, Pizza, Mariagrazia, Rappuoli, Rino, Donati, Claudio
Publicado em 2013

MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples

Por Zolfo, Moreno, Tett, Adrian, Jousson, Olivier, Donati, Claudio, Segata, Nicola
Publicado no Nucleic Acids Res (2017)

MICCA: a complete and accurate software for taxonomic profiling of metagenomic data

Por Albanese, Davide, Fontana, Paolo, De Filippo, Carlotta, Cavalieri, Duccio, Donati, Claudio
Publicado no Sci Rep (2015)

PIPE-chipSAD: A Pipeline for the Analysis of High Density Arrays of Bacterial Transcriptomes

Por Bottini, Silvia, Del Tordello, Elena, Fagnocchi, Luca, Donati, Claudio, Muzzi, Alessandro
Publicado no Front Mol Biosci (2016)

Dynamic changes in microbiota and mycobiota during spontaneous ‘Vino Santo Trentino’ fermentation

Por Stefanini, Irene, Albanese, Davide, Cavazza, Agostino, Franciosi, Elena, De Filippo, Carlotta, Donati, Claudio, Cavalieri, Duccio
Publicado no Microb Biotechnol (2016)

The Hfq-Dependent Small Noncoding RNA NrrF Directly Mediates Fur-Dependent Positive Regulation of Succinate Dehydrogenase in Neisseria meningitidis

Por Metruccio, Matteo M. E., Fantappiè, Laura, Serruto, Davide, Muzzi, Alessandro, Roncarati, Davide, Donati, Claudio, Scarlato, Vincenzo, Delany, Isabel
Publicado em 2009

Sequence Analysis of 96 Genomic Regions Identifies Distinct Evolutionary Lineages within CC156, the Largest Streptococcus pneumoniae Clonal Complex in the MLST Database

Por Moschioni, Monica, Lo Sapio, Morena, Crisafulli, Giovanni, Torricelli, Giulia, Guidotti, Silvia, Muzzi, Alessandro, Barocchi, Michèle A., Donati, Claudio
Publicado em 2013

Serotype IV Streptococcus agalactiae ST-452 has arisen from large genomic recombination events between CC23 and the hypervirulent CC17 lineages

Por Campisi, Edmondo, Rinaudo, C. Daniela, Donati, Claudio, Barucco, Mara, Torricelli, Giulia, Edwards, Morven S., Baker, Carol J., Margarit, Imma, Rosini, Roberto
Publicado no Sci Rep (2016)

Habitat fragmentation is associated to gut microbiota diversity of an endangered primate: implications for conservation

Por Barelli, Claudia, Albanese, Davide, Donati, Claudio, Pindo, Massimo, Dallago, Chiara, Rovero, Francesco, Cavalieri, Duccio, Michael Tuohy, Kieran, Christine Hauffe, Heidi, De Filippo, Carlotta
Publicado no Sci Rep (2015)

Age and Gender Affect the Composition of Fungal Population of the Human Gastrointestinal Tract

Por Strati, Francesco, Di Paola, Monica, Stefanini, Irene, Albanese, Davide, Rizzetto, Lisa, Lionetti, Paolo, Calabrò, Antonio, Jousson, Olivier, Donati, Claudio, Cavalieri, Duccio, De Filippo, Carlotta
Publicado no Front Microbiol (2016)

New evidences on the altered gut microbiota in autism spectrum disorders

Por Strati, Francesco, Cavalieri, Duccio, Albanese, Davide, De Felice, Claudio, Donati, Claudio, Hayek, Joussef, Jousson, Olivier, Leoncini, Silvia, Renzi, Daniela, Calabrò, Antonio, De Filippo, Carlotta
Publicado no Microbiome (2017)

The Streptococcus pneumoniae Pilus-1 Displays a Biphasic Expression Pattern

Por De Angelis, Gabriella, Moschioni, Monica, Muzzi, Alessandro, Pezzicoli, Alfredo, Censini, Stefano, Delany, Isabel, Lo Sapio, Morena, Sinisi, Antonia, Donati, Claudio, Masignani, Vega, Barocchi, Michèle A.
Publicado em 2011

Genome sequencing of disease and carriage isolates of nontypeable Haemophilus influenzae identifies discrete population structure

Por De Chiara, Matteo, Hood, Derek, Muzzi, Alessandro, Pickard, Derek J., Perkins, Tim, Pizza, Mariagrazia, Dougan, Gordon, Rappuoli, Rino, Moxon, E. Richard, Soriani, Marco, Donati, Claudio
Publicado em 2014

Core Microbiota and Metabolome of Vitis vinifera L. cv. Corvina Grapes and Musts

Por Stefanini, Irene, Carlin, Silvia, Tocci, Noemi, Albanese, Davide, Donati, Claudio, Franceschi, Pietro, Paris, Michele, Zenato, Alberto, Tempesta, Silvano, Bronzato, Alberto, Vrhovsek, Urska, Mattivi, Fulvio, Cavalieri, Duccio
Publicado no Front Microbiol (2017)

Alteration of Fecal Microbiota Profiles in Juvenile Idiopathic Arthritis. Associations with HLA-B27 Allele and Disease Status

Por Di Paola, Monica, Cavalieri, Duccio, Albanese, Davide, Sordo, Maddalena, Pindo, Massimo, Donati, Claudio, Pagnini, Ilaria, Giani, Teresa, Simonini, Gabriele, Paladini, Alessia, Lionetti, Paolo, De Filippo, Carlotta, Cimaz, Rolando
Publicado no Front Microbiol (2016)