Differential Integration of Transcriptome and Proteome Identifies Pan-Cancer Prognostic Biomarkers

di Schwartz, Gregory W., Petrovic, Jelena, Zhou, Yeqiao, Faryabi, Robert B.
Pubblicato in Front Genet (2018)

TooManyCells identifies and visualizes relationships of single-cell clades

di Schwartz, Gregory W., Zhou, Yeqiao, Petrovic, Jelena, Fasolino, Maria, Xu, Lanwei, Shaffer, Sydney M., Pear, Warren S., Vahedi, Golnaz, Faryabi, Robert B.
Pubblicato in Nat Methods (2020)

Trib2 Suppresses Tumor Initiation in Notch-Driven T-ALL

di Stein, Sarah J., Mack, Ethan A., Rome, Kelly S., Pajcini, Kostandin V., Ohtani, Takuya, Xu, Lanwei, Li, Yunlei, Meijerink, Jules P. P., Faryabi, Robert B., Pear, Warren S.
Pubblicato in PLoS One (2016)

Classes of ITD predict outcomes in AML patients treated with FLT3 inhibitors

di Schwartz, Gregory W., Manning, Bryan, Zhou, Yeqiao, Velu, Priya, Bigdeli, Ashkan, Astles, Rachel, Lehman, Anne W., Morrissette, Jennifer J.D., Perl, Alexander E., Li, Mingyao, Carroll, Martin, Faryabi, Robert B.
Pubblicato in Clin Cancer Res (2018)

The vascular landscape of human cancer

di Kahn, Benjamin M., Lucas, Alfredo, Alur, Rohan G., Wengyn, Maximillian D., Schwartz, Gregory W., Li, Jinyang, Sun, Kathryn, Maurer, H. Carlo, Olive, Kenneth P., Faryabi, Robert B., Stanger, Ben Z.
Pubblicato in J Clin Invest (2021)

The DNA damage- and transcription- associated protein Paxip1 controls thymocyte development and emigration

di Callen, Elsa, Faryabi, Robert B., Luckey, Megan, Hao, Bingtao, Daniel, Jeremy A., Yang, Wenjing, Sun, Hong-Wei, Dressler, Greg, Peng, Weiqun, Chi, Hongbo, Ge, Kai, Krangel, Michael S., Park, Jung-Hyun, Nussenzweig, André
Pubblicazione 2012

ALC1 links chromatin accessibility to PARP inhibitor response in homologous recombination-deficient cells

di Verma, Priyanka, Zhou, Yeqiao, Cao, Zhendong, Deraska, Peter V., Deb, Moniher, Arai, Eri, Li, Weihua, Shao, Yue, Puentes, Laura, Li, Yiwen, Patankar, Sonali, Mach, Robert H., Faryabi, Robert B., Shi, Junwei, Greenberg, Roger A.
Pubblicato in Nat Cell Biol (2021)

BRCA1 functions independently of homologous recombination in DNA interstrand cross-link repair

di Bunting, Samuel F, Callen, Elsa, Kozak, Marina L, Kim, Jung-Min, Wong, Nancy, Lopez-Contreras, Andres J, Ludwig, Thomas, Baer, Richard, Faryabi, Robert B, Malhowski, Amy, Chen, Hua-Tang, Fernandez-Capetillo, Oscar, D’Andrea, Alan, Nussenzweig, Andre
Pubblicazione 2012

A novel class of early replicating fragile sites that contribute to genome instability in B cell lymphomas

di Barlow, Jacqueline, Faryabi, Robert B., Callen, Elsa, Wong, Nancy, Malhowski, Amy, Chen, Hua Tang, Gutierez-Cruz, Gustavo, Sun, Hong-Wei, McKinnon, Peter, Wright, George, Casellas, Rafael, Robbiani, Davide F., Staudt, Louis, Fernandez-Capetillo, Oscar, Nussenzweig, André
Pubblicazione 2013

MafB is a novel enhancer of oncogenic Notch signaling in T-cell acute lymphoblastic leukemia

di Pajcini, Kostandin V., Xu, Lanwei, Shao, Lijian, Petrovic, Jelena, Palasiewicz, Karol, Ohtani, Yumi, Bailis, Will, Lee, Curtis, Wertheim, Gerald B., Mani, Rajeswaran, Muthusamy, Natarajan, Li, Yunlei, Meijerink, Jules P.P., Blacklow, Stephen C., Faryabi, Robert B., Cherry, Sara, Pear, Warren S.
Pubblicato in Sci Signal (2017)

Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression

di Fasolino, Maria, Goldman, Naomi, Wang, Wenliang, Cattau, Benjamin, Zhou, Yeqiao, Petrovic, Jelena, Link, Verena M., Cote, Allison, Chandra, Aditi, Silverman, Michael, Joyce, Eric F., Little, Shawn C., Kaestner, Klaus H., Naji, Ali, Raj, Arjun, Henao-Mejia, Jorge, Faryabi, Robert B., Vahedi, Golnaz
Pubblicato in Immunity (2020)

Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques

di Petrovic, Jelena, Zhou, Yeqiao, Fasolino, Maria, Goldman, Naomi, Schwartz, Gregory W., Mumbach, Maxwell R., Nguyen, Son C., Rome, Kelly S., Sela, Yogev, Zapataro, Zachary, Blacklow, Stephen C., Kruhlak, Michael J., Shi, Junwei, Aster, Jon C., Joyce, Eric F., Little, Shawn C., Vahedi, Golnaz, Pear, Warren S., Faryabi, Robert B.
Pubblicato in Mol Cell (2019)

Trib1 regulates T cell differentiation during chronic infection by restraining the effector program

di Rome, Kelly S., Stein, Sarah J., Kurachi, Makoto, Petrovic, Jelena, Schwartz, Gregory W., Mack, Ethan A., Uljon, Sacha, Wu, Winona W., DeHart, Anne G., McClory, Susan E., Xu, Lanwei, Gimotty, Phyllis A., Blacklow, Stephen C., Faryabi, Robert B., Wherry, E. John, Jordan, Martha S., Pear, Warren S.
Pubblicato in J Exp Med (2020)

53BP1 mediates productive and mutagenic DNA repair through distinct phosphoprotein interactions

di Callen, Elsa, Di Virgilio, Michela, Kruhlak, Michael J., Nieto-Soler, Maria, Wong, Nancy, Chen, Hua-Tang, Faryabi, Robert B., Polato, Federica, Santos, Margarida, Starnes, Linda M., Wesemann, Duane R., Lee, Ji-Eun, Tubbs, Anthony, Sleckman, Barry P., Daniel, Jeremy A., Ge, Kai, Alt, Frederick W., Fernandez-Capetillo, Oscar, Nussenzweig, Michel C., Nussenzweig, André
Pubblicazione 2013

DNA-damage-induced differentiation of leukaemic cells as an anti-cancer barrier

di Santos, Margarida A., Faryabi, Robert B., Ergen, Aysegul V., Day, Amanda M., Malhowski, Amy, Canela, Andres, Onozawa, Masahiro, Lee, Ji-Eun, Callen, Elsa, Gutierrez-Martinez, Paula, Chen, Hua-Tang, Wong, Nancy, Finkel, Nadia, Deshpande, Aniruddha, Sharrow, Susan, Rossi, Derrick J., Ito, Keisuke, Ge, Kai, Aplan, Peter D., Armstrong, Scott A., Nussenzweig, André
Pubblicato in Nature (2014)

Functional proteogenomics reveals biomarkers and therapeutic targets in lymphomas

di Rolland, Delphine C. M., Basrur, Venkatesha, Jeon, Yoon-Kyung, McNeil-Schwalm, Carla, Fermin, Damian, Conlon, Kevin P., Zhou, Yeqiao, Ng, Samuel Y., Tsou, Chih-Chiang, Brown, Noah A., Thomas, Dafydd G., Bailey, Nathanael G., Omenn, Gilbert S., Nesvizhskii, Alexey I., Root, David E., Weinstock, David M., Faryabi, Robert B., Lim, Megan S., Elenitoba-Johnson, Kojo S. J.
Pubblicato in Proc Natl Acad Sci U S A (2017)

A Unique B-cell Regulome Links Notch to Downstream Oncogenic Pathways in Small B-cell Lymphomas

di Ryan, Russell J.H., Petrovic, Jelena, Rausch, Dylan M., Zhou, Yeqiao, Lareau, Caleb A., Kluk, Michael J., Christie, Amanda L., Lee, Winston Y., Tarjan, Daniel, Guo, Bingqian, Donohue, Laura K.H., Gillespie, Shawn M., Nardi, Valentina, Hochberg, Ephraim P., Blacklow, Stephen C., Weinstock, David M., Faryabi, Robert B., Bernstein, Bradley E., Aster, Jon C., Pear, Warren S.
Pubblicato in Cell Rep (2017)

Tumor cell-intrinsic factors underlie heterogeneity of immune cell infiltration and response to immunotherapy

di Li, Jinyang, Byrne, Katelyn T., Yan, Fangxue, Yamazoe, Taiji, Chen, Zeyu, Baslan, Timour, Richman, Lee P., Lin, Jeffrey, Sun, Yu H., Rech, Andrew J., Balli, David, Hay, Ceire A., Sela, Yogev, Merrell, Allyson J., Liudahl, Shannon M., Gordon, Naomi, Norgard, Robert J., Yuan, Salina, Yu, Sixiang, Chao, Timothy, Ye, Shuai, Eisinger-Mathason, T.S. Karin, Faryabi, Robert B., Tobias, John W., Lowe, Scott, Coussens, Lisa M., Wherry, E. John, Vonderheide, Robert H., Stanger, Ben Z.
Pubblicato in Immunity (2018)

The Pediatric Cell Atlas: defining the growth phase of human development at single-cell resolution

di Taylor, Deanne M., Aronow, Bruce J., Tan, Kai, Bernt, Kathrin, Salomonis, Nathan, Greene, Casey S., Frolova, Alina, Henrickson, Sarah E., Wells, Andrew, Pei, Liming, Jaiswal, Jyoti K., Whitsett, Jeffrey, Hamilton, Kathryn E., MacParland, Sonya A., Kelsen, Judith, Heuckeroth, Robert O., Potter, S. Steven, Vella, Laura A., Terry, Natalie A., Ghanem, Louis R., Kennedy, Benjamin C., Helbig, Ingo, Sullivan, Kathleen E., Castelo-Soccio, Leslie, Kreigstein, Arnold, Herse, Florian, Nawijn, Martijn C., Koppelman, Gerard H., Haendel, Melissa, Harris, Nomi L., Rokita, Jo Lynne, Zhang, Yuanchao, Regev, Aviv, Rozenblatt-Rosen, Orit, Rood, Jennifer E., Tickle, Timothy L., Vento-Tormo, Roser, Alimohamed, Saif, Lek, Monkol, Mar, Jessica C., Loomes, Kathleen M., Barrett, David M., Uapinyoying, Prech, Beggs, Alan H., Agrawal, Pankaj B., Chen, Yi-Wen, Muir, Amanda B., Garmire, Lana X., Snapper, Scott B., Nazarian, Javad, Seeholzer, Steven H., Fazelinia, Hossein, Singh, Larry N., Faryabi, Robert B., Raman, Pichai, Dawany, Noor, Xie, Hongbo Michael, Devkota, Batsal, Diskin, Sharon J., Anderson, Stewart A., Rappaport, Eric F., Peranteau, William, Wikenheiser-Brokamp, Kathryn A., Teichmann, Sarah, Wallace, Douglas, Peng, Tao, Ding, Yang-yang, Kim, Man S., Xing, Yi, Kong, Sek Won, Bönnemann, Carsten G., Mandl, Kenneth D., White, Peter S.
Pubblicato in Dev Cell (2019)