Differential Integration of Transcriptome and Proteome Identifies Pan-Cancer Prognostic Biomarkers

Por Schwartz, Gregory W., Petrovic, Jelena, Zhou, Yeqiao, Faryabi, Robert B.
Publicado no Front Genet (2018)

TooManyCells identifies and visualizes relationships of single-cell clades

Por Schwartz, Gregory W., Zhou, Yeqiao, Petrovic, Jelena, Fasolino, Maria, Xu, Lanwei, Shaffer, Sydney M., Pear, Warren S., Vahedi, Golnaz, Faryabi, Robert B.
Publicado no Nat Methods (2020)

Trib2 Suppresses Tumor Initiation in Notch-Driven T-ALL

Por Stein, Sarah J., Mack, Ethan A., Rome, Kelly S., Pajcini, Kostandin V., Ohtani, Takuya, Xu, Lanwei, Li, Yunlei, Meijerink, Jules P. P., Faryabi, Robert B., Pear, Warren S.
Publicado no PLoS One (2016)

Classes of ITD predict outcomes in AML patients treated with FLT3 inhibitors

Por Schwartz, Gregory W., Manning, Bryan, Zhou, Yeqiao, Velu, Priya, Bigdeli, Ashkan, Astles, Rachel, Lehman, Anne W., Morrissette, Jennifer J.D., Perl, Alexander E., Li, Mingyao, Carroll, Martin, Faryabi, Robert B.
Publicado no Clin Cancer Res (2018)

The vascular landscape of human cancer

Por Kahn, Benjamin M., Lucas, Alfredo, Alur, Rohan G., Wengyn, Maximillian D., Schwartz, Gregory W., Li, Jinyang, Sun, Kathryn, Maurer, H. Carlo, Olive, Kenneth P., Faryabi, Robert B., Stanger, Ben Z.
Publicado no J Clin Invest (2021)

The DNA damage- and transcription- associated protein Paxip1 controls thymocyte development and emigration

Por Callen, Elsa, Faryabi, Robert B., Luckey, Megan, Hao, Bingtao, Daniel, Jeremy A., Yang, Wenjing, Sun, Hong-Wei, Dressler, Greg, Peng, Weiqun, Chi, Hongbo, Ge, Kai, Krangel, Michael S., Park, Jung-Hyun, Nussenzweig, André
Publicado em 2012

ALC1 links chromatin accessibility to PARP inhibitor response in homologous recombination-deficient cells

Por Verma, Priyanka, Zhou, Yeqiao, Cao, Zhendong, Deraska, Peter V., Deb, Moniher, Arai, Eri, Li, Weihua, Shao, Yue, Puentes, Laura, Li, Yiwen, Patankar, Sonali, Mach, Robert H., Faryabi, Robert B., Shi, Junwei, Greenberg, Roger A.
Publicado no Nat Cell Biol (2021)

BRCA1 functions independently of homologous recombination in DNA interstrand cross-link repair

Por Bunting, Samuel F, Callen, Elsa, Kozak, Marina L, Kim, Jung-Min, Wong, Nancy, Lopez-Contreras, Andres J, Ludwig, Thomas, Baer, Richard, Faryabi, Robert B, Malhowski, Amy, Chen, Hua-Tang, Fernandez-Capetillo, Oscar, D’Andrea, Alan, Nussenzweig, Andre
Publicado em 2012

A novel class of early replicating fragile sites that contribute to genome instability in B cell lymphomas

Por Barlow, Jacqueline, Faryabi, Robert B., Callen, Elsa, Wong, Nancy, Malhowski, Amy, Chen, Hua Tang, Gutierez-Cruz, Gustavo, Sun, Hong-Wei, McKinnon, Peter, Wright, George, Casellas, Rafael, Robbiani, Davide F., Staudt, Louis, Fernandez-Capetillo, Oscar, Nussenzweig, André
Publicado em 2013

MafB is a novel enhancer of oncogenic Notch signaling in T-cell acute lymphoblastic leukemia

Por Pajcini, Kostandin V., Xu, Lanwei, Shao, Lijian, Petrovic, Jelena, Palasiewicz, Karol, Ohtani, Yumi, Bailis, Will, Lee, Curtis, Wertheim, Gerald B., Mani, Rajeswaran, Muthusamy, Natarajan, Li, Yunlei, Meijerink, Jules P.P., Blacklow, Stephen C., Faryabi, Robert B., Cherry, Sara, Pear, Warren S.
Publicado no Sci Signal (2017)

Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression

Por Fasolino, Maria, Goldman, Naomi, Wang, Wenliang, Cattau, Benjamin, Zhou, Yeqiao, Petrovic, Jelena, Link, Verena M., Cote, Allison, Chandra, Aditi, Silverman, Michael, Joyce, Eric F., Little, Shawn C., Kaestner, Klaus H., Naji, Ali, Raj, Arjun, Henao-Mejia, Jorge, Faryabi, Robert B., Vahedi, Golnaz
Publicado no Immunity (2020)

Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques

Por Petrovic, Jelena, Zhou, Yeqiao, Fasolino, Maria, Goldman, Naomi, Schwartz, Gregory W., Mumbach, Maxwell R., Nguyen, Son C., Rome, Kelly S., Sela, Yogev, Zapataro, Zachary, Blacklow, Stephen C., Kruhlak, Michael J., Shi, Junwei, Aster, Jon C., Joyce, Eric F., Little, Shawn C., Vahedi, Golnaz, Pear, Warren S., Faryabi, Robert B.
Publicado no Mol Cell (2019)

Trib1 regulates T cell differentiation during chronic infection by restraining the effector program

Por Rome, Kelly S., Stein, Sarah J., Kurachi, Makoto, Petrovic, Jelena, Schwartz, Gregory W., Mack, Ethan A., Uljon, Sacha, Wu, Winona W., DeHart, Anne G., McClory, Susan E., Xu, Lanwei, Gimotty, Phyllis A., Blacklow, Stephen C., Faryabi, Robert B., Wherry, E. John, Jordan, Martha S., Pear, Warren S.
Publicado no J Exp Med (2020)

53BP1 mediates productive and mutagenic DNA repair through distinct phosphoprotein interactions

Por Callen, Elsa, Di Virgilio, Michela, Kruhlak, Michael J., Nieto-Soler, Maria, Wong, Nancy, Chen, Hua-Tang, Faryabi, Robert B., Polato, Federica, Santos, Margarida, Starnes, Linda M., Wesemann, Duane R., Lee, Ji-Eun, Tubbs, Anthony, Sleckman, Barry P., Daniel, Jeremy A., Ge, Kai, Alt, Frederick W., Fernandez-Capetillo, Oscar, Nussenzweig, Michel C., Nussenzweig, André
Publicado em 2013

DNA-damage-induced differentiation of leukaemic cells as an anti-cancer barrier

Por Santos, Margarida A., Faryabi, Robert B., Ergen, Aysegul V., Day, Amanda M., Malhowski, Amy, Canela, Andres, Onozawa, Masahiro, Lee, Ji-Eun, Callen, Elsa, Gutierrez-Martinez, Paula, Chen, Hua-Tang, Wong, Nancy, Finkel, Nadia, Deshpande, Aniruddha, Sharrow, Susan, Rossi, Derrick J., Ito, Keisuke, Ge, Kai, Aplan, Peter D., Armstrong, Scott A., Nussenzweig, André
Publicado no Nature (2014)

Functional proteogenomics reveals biomarkers and therapeutic targets in lymphomas

Por Rolland, Delphine C. M., Basrur, Venkatesha, Jeon, Yoon-Kyung, McNeil-Schwalm, Carla, Fermin, Damian, Conlon, Kevin P., Zhou, Yeqiao, Ng, Samuel Y., Tsou, Chih-Chiang, Brown, Noah A., Thomas, Dafydd G., Bailey, Nathanael G., Omenn, Gilbert S., Nesvizhskii, Alexey I., Root, David E., Weinstock, David M., Faryabi, Robert B., Lim, Megan S., Elenitoba-Johnson, Kojo S. J.
Publicado no Proc Natl Acad Sci U S A (2017)

A Unique B-cell Regulome Links Notch to Downstream Oncogenic Pathways in Small B-cell Lymphomas

Por Ryan, Russell J.H., Petrovic, Jelena, Rausch, Dylan M., Zhou, Yeqiao, Lareau, Caleb A., Kluk, Michael J., Christie, Amanda L., Lee, Winston Y., Tarjan, Daniel, Guo, Bingqian, Donohue, Laura K.H., Gillespie, Shawn M., Nardi, Valentina, Hochberg, Ephraim P., Blacklow, Stephen C., Weinstock, David M., Faryabi, Robert B., Bernstein, Bradley E., Aster, Jon C., Pear, Warren S.
Publicado no Cell Rep (2017)

Tumor cell-intrinsic factors underlie heterogeneity of immune cell infiltration and response to immunotherapy

Por Li, Jinyang, Byrne, Katelyn T., Yan, Fangxue, Yamazoe, Taiji, Chen, Zeyu, Baslan, Timour, Richman, Lee P., Lin, Jeffrey, Sun, Yu H., Rech, Andrew J., Balli, David, Hay, Ceire A., Sela, Yogev, Merrell, Allyson J., Liudahl, Shannon M., Gordon, Naomi, Norgard, Robert J., Yuan, Salina, Yu, Sixiang, Chao, Timothy, Ye, Shuai, Eisinger-Mathason, T.S. Karin, Faryabi, Robert B., Tobias, John W., Lowe, Scott, Coussens, Lisa M., Wherry, E. John, Vonderheide, Robert H., Stanger, Ben Z.
Publicado no Immunity (2018)

The Pediatric Cell Atlas: defining the growth phase of human development at single-cell resolution

Por Taylor, Deanne M., Aronow, Bruce J., Tan, Kai, Bernt, Kathrin, Salomonis, Nathan, Greene, Casey S., Frolova, Alina, Henrickson, Sarah E., Wells, Andrew, Pei, Liming, Jaiswal, Jyoti K., Whitsett, Jeffrey, Hamilton, Kathryn E., MacParland, Sonya A., Kelsen, Judith, Heuckeroth, Robert O., Potter, S. Steven, Vella, Laura A., Terry, Natalie A., Ghanem, Louis R., Kennedy, Benjamin C., Helbig, Ingo, Sullivan, Kathleen E., Castelo-Soccio, Leslie, Kreigstein, Arnold, Herse, Florian, Nawijn, Martijn C., Koppelman, Gerard H., Haendel, Melissa, Harris, Nomi L., Rokita, Jo Lynne, Zhang, Yuanchao, Regev, Aviv, Rozenblatt-Rosen, Orit, Rood, Jennifer E., Tickle, Timothy L., Vento-Tormo, Roser, Alimohamed, Saif, Lek, Monkol, Mar, Jessica C., Loomes, Kathleen M., Barrett, David M., Uapinyoying, Prech, Beggs, Alan H., Agrawal, Pankaj B., Chen, Yi-Wen, Muir, Amanda B., Garmire, Lana X., Snapper, Scott B., Nazarian, Javad, Seeholzer, Steven H., Fazelinia, Hossein, Singh, Larry N., Faryabi, Robert B., Raman, Pichai, Dawany, Noor, Xie, Hongbo Michael, Devkota, Batsal, Diskin, Sharon J., Anderson, Stewart A., Rappaport, Eric F., Peranteau, William, Wikenheiser-Brokamp, Kathryn A., Teichmann, Sarah, Wallace, Douglas, Peng, Tao, Ding, Yang-yang, Kim, Man S., Xing, Yi, Kong, Sek Won, Bönnemann, Carsten G., Mandl, Kenneth D., White, Peter S.
Publicado no Dev Cell (2019)