Differential Integration of Transcriptome and Proteome Identifies Pan-Cancer Prognostic Biomarkers

ανά Schwartz, Gregory W., Petrovic, Jelena, Zhou, Yeqiao, Faryabi, Robert B.
Τόπος έκδοσης Front Genet (2018)

TooManyCells identifies and visualizes relationships of single-cell clades

ανά Schwartz, Gregory W., Zhou, Yeqiao, Petrovic, Jelena, Fasolino, Maria, Xu, Lanwei, Shaffer, Sydney M., Pear, Warren S., Vahedi, Golnaz, Faryabi, Robert B.
Τόπος έκδοσης Nat Methods (2020)

Trib2 Suppresses Tumor Initiation in Notch-Driven T-ALL

ανά Stein, Sarah J., Mack, Ethan A., Rome, Kelly S., Pajcini, Kostandin V., Ohtani, Takuya, Xu, Lanwei, Li, Yunlei, Meijerink, Jules P. P., Faryabi, Robert B., Pear, Warren S.
Τόπος έκδοσης PLoS One (2016)

Classes of ITD predict outcomes in AML patients treated with FLT3 inhibitors

ανά Schwartz, Gregory W., Manning, Bryan, Zhou, Yeqiao, Velu, Priya, Bigdeli, Ashkan, Astles, Rachel, Lehman, Anne W., Morrissette, Jennifer J.D., Perl, Alexander E., Li, Mingyao, Carroll, Martin, Faryabi, Robert B.
Τόπος έκδοσης Clin Cancer Res (2018)

The vascular landscape of human cancer

ανά Kahn, Benjamin M., Lucas, Alfredo, Alur, Rohan G., Wengyn, Maximillian D., Schwartz, Gregory W., Li, Jinyang, Sun, Kathryn, Maurer, H. Carlo, Olive, Kenneth P., Faryabi, Robert B., Stanger, Ben Z.
Τόπος έκδοσης J Clin Invest (2021)

The DNA damage- and transcription- associated protein Paxip1 controls thymocyte development and emigration

ανά Callen, Elsa, Faryabi, Robert B., Luckey, Megan, Hao, Bingtao, Daniel, Jeremy A., Yang, Wenjing, Sun, Hong-Wei, Dressler, Greg, Peng, Weiqun, Chi, Hongbo, Ge, Kai, Krangel, Michael S., Park, Jung-Hyun, Nussenzweig, André
Έκδοση 2012

ALC1 links chromatin accessibility to PARP inhibitor response in homologous recombination-deficient cells

ανά Verma, Priyanka, Zhou, Yeqiao, Cao, Zhendong, Deraska, Peter V., Deb, Moniher, Arai, Eri, Li, Weihua, Shao, Yue, Puentes, Laura, Li, Yiwen, Patankar, Sonali, Mach, Robert H., Faryabi, Robert B., Shi, Junwei, Greenberg, Roger A.
Τόπος έκδοσης Nat Cell Biol (2021)

BRCA1 functions independently of homologous recombination in DNA interstrand cross-link repair

ανά Bunting, Samuel F, Callen, Elsa, Kozak, Marina L, Kim, Jung-Min, Wong, Nancy, Lopez-Contreras, Andres J, Ludwig, Thomas, Baer, Richard, Faryabi, Robert B, Malhowski, Amy, Chen, Hua-Tang, Fernandez-Capetillo, Oscar, D’Andrea, Alan, Nussenzweig, Andre
Έκδοση 2012

A novel class of early replicating fragile sites that contribute to genome instability in B cell lymphomas

ανά Barlow, Jacqueline, Faryabi, Robert B., Callen, Elsa, Wong, Nancy, Malhowski, Amy, Chen, Hua Tang, Gutierez-Cruz, Gustavo, Sun, Hong-Wei, McKinnon, Peter, Wright, George, Casellas, Rafael, Robbiani, Davide F., Staudt, Louis, Fernandez-Capetillo, Oscar, Nussenzweig, André
Έκδοση 2013

MafB is a novel enhancer of oncogenic Notch signaling in T-cell acute lymphoblastic leukemia

ανά Pajcini, Kostandin V., Xu, Lanwei, Shao, Lijian, Petrovic, Jelena, Palasiewicz, Karol, Ohtani, Yumi, Bailis, Will, Lee, Curtis, Wertheim, Gerald B., Mani, Rajeswaran, Muthusamy, Natarajan, Li, Yunlei, Meijerink, Jules P.P., Blacklow, Stephen C., Faryabi, Robert B., Cherry, Sara, Pear, Warren S.
Τόπος έκδοσης Sci Signal (2017)

Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression

ανά Fasolino, Maria, Goldman, Naomi, Wang, Wenliang, Cattau, Benjamin, Zhou, Yeqiao, Petrovic, Jelena, Link, Verena M., Cote, Allison, Chandra, Aditi, Silverman, Michael, Joyce, Eric F., Little, Shawn C., Kaestner, Klaus H., Naji, Ali, Raj, Arjun, Henao-Mejia, Jorge, Faryabi, Robert B., Vahedi, Golnaz
Τόπος έκδοσης Immunity (2020)

Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques

ανά Petrovic, Jelena, Zhou, Yeqiao, Fasolino, Maria, Goldman, Naomi, Schwartz, Gregory W., Mumbach, Maxwell R., Nguyen, Son C., Rome, Kelly S., Sela, Yogev, Zapataro, Zachary, Blacklow, Stephen C., Kruhlak, Michael J., Shi, Junwei, Aster, Jon C., Joyce, Eric F., Little, Shawn C., Vahedi, Golnaz, Pear, Warren S., Faryabi, Robert B.
Τόπος έκδοσης Mol Cell (2019)

Trib1 regulates T cell differentiation during chronic infection by restraining the effector program

ανά Rome, Kelly S., Stein, Sarah J., Kurachi, Makoto, Petrovic, Jelena, Schwartz, Gregory W., Mack, Ethan A., Uljon, Sacha, Wu, Winona W., DeHart, Anne G., McClory, Susan E., Xu, Lanwei, Gimotty, Phyllis A., Blacklow, Stephen C., Faryabi, Robert B., Wherry, E. John, Jordan, Martha S., Pear, Warren S.
Τόπος έκδοσης J Exp Med (2020)

53BP1 mediates productive and mutagenic DNA repair through distinct phosphoprotein interactions

ανά Callen, Elsa, Di Virgilio, Michela, Kruhlak, Michael J., Nieto-Soler, Maria, Wong, Nancy, Chen, Hua-Tang, Faryabi, Robert B., Polato, Federica, Santos, Margarida, Starnes, Linda M., Wesemann, Duane R., Lee, Ji-Eun, Tubbs, Anthony, Sleckman, Barry P., Daniel, Jeremy A., Ge, Kai, Alt, Frederick W., Fernandez-Capetillo, Oscar, Nussenzweig, Michel C., Nussenzweig, André
Έκδοση 2013

DNA-damage-induced differentiation of leukaemic cells as an anti-cancer barrier

ανά Santos, Margarida A., Faryabi, Robert B., Ergen, Aysegul V., Day, Amanda M., Malhowski, Amy, Canela, Andres, Onozawa, Masahiro, Lee, Ji-Eun, Callen, Elsa, Gutierrez-Martinez, Paula, Chen, Hua-Tang, Wong, Nancy, Finkel, Nadia, Deshpande, Aniruddha, Sharrow, Susan, Rossi, Derrick J., Ito, Keisuke, Ge, Kai, Aplan, Peter D., Armstrong, Scott A., Nussenzweig, André
Τόπος έκδοσης Nature (2014)

Functional proteogenomics reveals biomarkers and therapeutic targets in lymphomas

ανά Rolland, Delphine C. M., Basrur, Venkatesha, Jeon, Yoon-Kyung, McNeil-Schwalm, Carla, Fermin, Damian, Conlon, Kevin P., Zhou, Yeqiao, Ng, Samuel Y., Tsou, Chih-Chiang, Brown, Noah A., Thomas, Dafydd G., Bailey, Nathanael G., Omenn, Gilbert S., Nesvizhskii, Alexey I., Root, David E., Weinstock, David M., Faryabi, Robert B., Lim, Megan S., Elenitoba-Johnson, Kojo S. J.
Τόπος έκδοσης Proc Natl Acad Sci U S A (2017)

A Unique B-cell Regulome Links Notch to Downstream Oncogenic Pathways in Small B-cell Lymphomas

ανά Ryan, Russell J.H., Petrovic, Jelena, Rausch, Dylan M., Zhou, Yeqiao, Lareau, Caleb A., Kluk, Michael J., Christie, Amanda L., Lee, Winston Y., Tarjan, Daniel, Guo, Bingqian, Donohue, Laura K.H., Gillespie, Shawn M., Nardi, Valentina, Hochberg, Ephraim P., Blacklow, Stephen C., Weinstock, David M., Faryabi, Robert B., Bernstein, Bradley E., Aster, Jon C., Pear, Warren S.
Τόπος έκδοσης Cell Rep (2017)

Tumor cell-intrinsic factors underlie heterogeneity of immune cell infiltration and response to immunotherapy

ανά Li, Jinyang, Byrne, Katelyn T., Yan, Fangxue, Yamazoe, Taiji, Chen, Zeyu, Baslan, Timour, Richman, Lee P., Lin, Jeffrey, Sun, Yu H., Rech, Andrew J., Balli, David, Hay, Ceire A., Sela, Yogev, Merrell, Allyson J., Liudahl, Shannon M., Gordon, Naomi, Norgard, Robert J., Yuan, Salina, Yu, Sixiang, Chao, Timothy, Ye, Shuai, Eisinger-Mathason, T.S. Karin, Faryabi, Robert B., Tobias, John W., Lowe, Scott, Coussens, Lisa M., Wherry, E. John, Vonderheide, Robert H., Stanger, Ben Z.
Τόπος έκδοσης Immunity (2018)

The Pediatric Cell Atlas: defining the growth phase of human development at single-cell resolution

ανά Taylor, Deanne M., Aronow, Bruce J., Tan, Kai, Bernt, Kathrin, Salomonis, Nathan, Greene, Casey S., Frolova, Alina, Henrickson, Sarah E., Wells, Andrew, Pei, Liming, Jaiswal, Jyoti K., Whitsett, Jeffrey, Hamilton, Kathryn E., MacParland, Sonya A., Kelsen, Judith, Heuckeroth, Robert O., Potter, S. Steven, Vella, Laura A., Terry, Natalie A., Ghanem, Louis R., Kennedy, Benjamin C., Helbig, Ingo, Sullivan, Kathleen E., Castelo-Soccio, Leslie, Kreigstein, Arnold, Herse, Florian, Nawijn, Martijn C., Koppelman, Gerard H., Haendel, Melissa, Harris, Nomi L., Rokita, Jo Lynne, Zhang, Yuanchao, Regev, Aviv, Rozenblatt-Rosen, Orit, Rood, Jennifer E., Tickle, Timothy L., Vento-Tormo, Roser, Alimohamed, Saif, Lek, Monkol, Mar, Jessica C., Loomes, Kathleen M., Barrett, David M., Uapinyoying, Prech, Beggs, Alan H., Agrawal, Pankaj B., Chen, Yi-Wen, Muir, Amanda B., Garmire, Lana X., Snapper, Scott B., Nazarian, Javad, Seeholzer, Steven H., Fazelinia, Hossein, Singh, Larry N., Faryabi, Robert B., Raman, Pichai, Dawany, Noor, Xie, Hongbo Michael, Devkota, Batsal, Diskin, Sharon J., Anderson, Stewart A., Rappaport, Eric F., Peranteau, William, Wikenheiser-Brokamp, Kathryn A., Teichmann, Sarah, Wallace, Douglas, Peng, Tao, Ding, Yang-yang, Kim, Man S., Xing, Yi, Kong, Sek Won, Bönnemann, Carsten G., Mandl, Kenneth D., White, Peter S.
Τόπος έκδοσης Dev Cell (2019)