Differential Integration of Transcriptome and Proteome Identifies Pan-Cancer Prognostic Biomarkers

von Schwartz, Gregory W., Petrovic, Jelena, Zhou, Yeqiao, Faryabi, Robert B.
Veröffentlicht in Front Genet (2018)

TooManyCells identifies and visualizes relationships of single-cell clades

von Schwartz, Gregory W., Zhou, Yeqiao, Petrovic, Jelena, Fasolino, Maria, Xu, Lanwei, Shaffer, Sydney M., Pear, Warren S., Vahedi, Golnaz, Faryabi, Robert B.
Veröffentlicht in Nat Methods (2020)

Trib2 Suppresses Tumor Initiation in Notch-Driven T-ALL

von Stein, Sarah J., Mack, Ethan A., Rome, Kelly S., Pajcini, Kostandin V., Ohtani, Takuya, Xu, Lanwei, Li, Yunlei, Meijerink, Jules P. P., Faryabi, Robert B., Pear, Warren S.
Veröffentlicht in PLoS One (2016)

Classes of ITD predict outcomes in AML patients treated with FLT3 inhibitors

von Schwartz, Gregory W., Manning, Bryan, Zhou, Yeqiao, Velu, Priya, Bigdeli, Ashkan, Astles, Rachel, Lehman, Anne W., Morrissette, Jennifer J.D., Perl, Alexander E., Li, Mingyao, Carroll, Martin, Faryabi, Robert B.
Veröffentlicht in Clin Cancer Res (2018)

The vascular landscape of human cancer

von Kahn, Benjamin M., Lucas, Alfredo, Alur, Rohan G., Wengyn, Maximillian D., Schwartz, Gregory W., Li, Jinyang, Sun, Kathryn, Maurer, H. Carlo, Olive, Kenneth P., Faryabi, Robert B., Stanger, Ben Z.
Veröffentlicht in J Clin Invest (2021)

The DNA damage- and transcription- associated protein Paxip1 controls thymocyte development and emigration

von Callen, Elsa, Faryabi, Robert B., Luckey, Megan, Hao, Bingtao, Daniel, Jeremy A., Yang, Wenjing, Sun, Hong-Wei, Dressler, Greg, Peng, Weiqun, Chi, Hongbo, Ge, Kai, Krangel, Michael S., Park, Jung-Hyun, Nussenzweig, André
Veröffentlicht 2012

ALC1 links chromatin accessibility to PARP inhibitor response in homologous recombination-deficient cells

von Verma, Priyanka, Zhou, Yeqiao, Cao, Zhendong, Deraska, Peter V., Deb, Moniher, Arai, Eri, Li, Weihua, Shao, Yue, Puentes, Laura, Li, Yiwen, Patankar, Sonali, Mach, Robert H., Faryabi, Robert B., Shi, Junwei, Greenberg, Roger A.
Veröffentlicht in Nat Cell Biol (2021)

BRCA1 functions independently of homologous recombination in DNA interstrand cross-link repair

von Bunting, Samuel F, Callen, Elsa, Kozak, Marina L, Kim, Jung-Min, Wong, Nancy, Lopez-Contreras, Andres J, Ludwig, Thomas, Baer, Richard, Faryabi, Robert B, Malhowski, Amy, Chen, Hua-Tang, Fernandez-Capetillo, Oscar, D’Andrea, Alan, Nussenzweig, Andre
Veröffentlicht 2012

A novel class of early replicating fragile sites that contribute to genome instability in B cell lymphomas

von Barlow, Jacqueline, Faryabi, Robert B., Callen, Elsa, Wong, Nancy, Malhowski, Amy, Chen, Hua Tang, Gutierez-Cruz, Gustavo, Sun, Hong-Wei, McKinnon, Peter, Wright, George, Casellas, Rafael, Robbiani, Davide F., Staudt, Louis, Fernandez-Capetillo, Oscar, Nussenzweig, André
Veröffentlicht 2013

MafB is a novel enhancer of oncogenic Notch signaling in T-cell acute lymphoblastic leukemia

von Pajcini, Kostandin V., Xu, Lanwei, Shao, Lijian, Petrovic, Jelena, Palasiewicz, Karol, Ohtani, Yumi, Bailis, Will, Lee, Curtis, Wertheim, Gerald B., Mani, Rajeswaran, Muthusamy, Natarajan, Li, Yunlei, Meijerink, Jules P.P., Blacklow, Stephen C., Faryabi, Robert B., Cherry, Sara, Pear, Warren S.
Veröffentlicht in Sci Signal (2017)

Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression

von Fasolino, Maria, Goldman, Naomi, Wang, Wenliang, Cattau, Benjamin, Zhou, Yeqiao, Petrovic, Jelena, Link, Verena M., Cote, Allison, Chandra, Aditi, Silverman, Michael, Joyce, Eric F., Little, Shawn C., Kaestner, Klaus H., Naji, Ali, Raj, Arjun, Henao-Mejia, Jorge, Faryabi, Robert B., Vahedi, Golnaz
Veröffentlicht in Immunity (2020)

Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques

von Petrovic, Jelena, Zhou, Yeqiao, Fasolino, Maria, Goldman, Naomi, Schwartz, Gregory W., Mumbach, Maxwell R., Nguyen, Son C., Rome, Kelly S., Sela, Yogev, Zapataro, Zachary, Blacklow, Stephen C., Kruhlak, Michael J., Shi, Junwei, Aster, Jon C., Joyce, Eric F., Little, Shawn C., Vahedi, Golnaz, Pear, Warren S., Faryabi, Robert B.
Veröffentlicht in Mol Cell (2019)

Trib1 regulates T cell differentiation during chronic infection by restraining the effector program

von Rome, Kelly S., Stein, Sarah J., Kurachi, Makoto, Petrovic, Jelena, Schwartz, Gregory W., Mack, Ethan A., Uljon, Sacha, Wu, Winona W., DeHart, Anne G., McClory, Susan E., Xu, Lanwei, Gimotty, Phyllis A., Blacklow, Stephen C., Faryabi, Robert B., Wherry, E. John, Jordan, Martha S., Pear, Warren S.
Veröffentlicht in J Exp Med (2020)

53BP1 mediates productive and mutagenic DNA repair through distinct phosphoprotein interactions

von Callen, Elsa, Di Virgilio, Michela, Kruhlak, Michael J., Nieto-Soler, Maria, Wong, Nancy, Chen, Hua-Tang, Faryabi, Robert B., Polato, Federica, Santos, Margarida, Starnes, Linda M., Wesemann, Duane R., Lee, Ji-Eun, Tubbs, Anthony, Sleckman, Barry P., Daniel, Jeremy A., Ge, Kai, Alt, Frederick W., Fernandez-Capetillo, Oscar, Nussenzweig, Michel C., Nussenzweig, André
Veröffentlicht 2013

DNA-damage-induced differentiation of leukaemic cells as an anti-cancer barrier

von Santos, Margarida A., Faryabi, Robert B., Ergen, Aysegul V., Day, Amanda M., Malhowski, Amy, Canela, Andres, Onozawa, Masahiro, Lee, Ji-Eun, Callen, Elsa, Gutierrez-Martinez, Paula, Chen, Hua-Tang, Wong, Nancy, Finkel, Nadia, Deshpande, Aniruddha, Sharrow, Susan, Rossi, Derrick J., Ito, Keisuke, Ge, Kai, Aplan, Peter D., Armstrong, Scott A., Nussenzweig, André
Veröffentlicht in Nature (2014)

Functional proteogenomics reveals biomarkers and therapeutic targets in lymphomas

von Rolland, Delphine C. M., Basrur, Venkatesha, Jeon, Yoon-Kyung, McNeil-Schwalm, Carla, Fermin, Damian, Conlon, Kevin P., Zhou, Yeqiao, Ng, Samuel Y., Tsou, Chih-Chiang, Brown, Noah A., Thomas, Dafydd G., Bailey, Nathanael G., Omenn, Gilbert S., Nesvizhskii, Alexey I., Root, David E., Weinstock, David M., Faryabi, Robert B., Lim, Megan S., Elenitoba-Johnson, Kojo S. J.
Veröffentlicht in Proc Natl Acad Sci U S A (2017)

A Unique B-cell Regulome Links Notch to Downstream Oncogenic Pathways in Small B-cell Lymphomas

von Ryan, Russell J.H., Petrovic, Jelena, Rausch, Dylan M., Zhou, Yeqiao, Lareau, Caleb A., Kluk, Michael J., Christie, Amanda L., Lee, Winston Y., Tarjan, Daniel, Guo, Bingqian, Donohue, Laura K.H., Gillespie, Shawn M., Nardi, Valentina, Hochberg, Ephraim P., Blacklow, Stephen C., Weinstock, David M., Faryabi, Robert B., Bernstein, Bradley E., Aster, Jon C., Pear, Warren S.
Veröffentlicht in Cell Rep (2017)

Tumor cell-intrinsic factors underlie heterogeneity of immune cell infiltration and response to immunotherapy

von Li, Jinyang, Byrne, Katelyn T., Yan, Fangxue, Yamazoe, Taiji, Chen, Zeyu, Baslan, Timour, Richman, Lee P., Lin, Jeffrey, Sun, Yu H., Rech, Andrew J., Balli, David, Hay, Ceire A., Sela, Yogev, Merrell, Allyson J., Liudahl, Shannon M., Gordon, Naomi, Norgard, Robert J., Yuan, Salina, Yu, Sixiang, Chao, Timothy, Ye, Shuai, Eisinger-Mathason, T.S. Karin, Faryabi, Robert B., Tobias, John W., Lowe, Scott, Coussens, Lisa M., Wherry, E. John, Vonderheide, Robert H., Stanger, Ben Z.
Veröffentlicht in Immunity (2018)

The Pediatric Cell Atlas: defining the growth phase of human development at single-cell resolution

von Taylor, Deanne M., Aronow, Bruce J., Tan, Kai, Bernt, Kathrin, Salomonis, Nathan, Greene, Casey S., Frolova, Alina, Henrickson, Sarah E., Wells, Andrew, Pei, Liming, Jaiswal, Jyoti K., Whitsett, Jeffrey, Hamilton, Kathryn E., MacParland, Sonya A., Kelsen, Judith, Heuckeroth, Robert O., Potter, S. Steven, Vella, Laura A., Terry, Natalie A., Ghanem, Louis R., Kennedy, Benjamin C., Helbig, Ingo, Sullivan, Kathleen E., Castelo-Soccio, Leslie, Kreigstein, Arnold, Herse, Florian, Nawijn, Martijn C., Koppelman, Gerard H., Haendel, Melissa, Harris, Nomi L., Rokita, Jo Lynne, Zhang, Yuanchao, Regev, Aviv, Rozenblatt-Rosen, Orit, Rood, Jennifer E., Tickle, Timothy L., Vento-Tormo, Roser, Alimohamed, Saif, Lek, Monkol, Mar, Jessica C., Loomes, Kathleen M., Barrett, David M., Uapinyoying, Prech, Beggs, Alan H., Agrawal, Pankaj B., Chen, Yi-Wen, Muir, Amanda B., Garmire, Lana X., Snapper, Scott B., Nazarian, Javad, Seeholzer, Steven H., Fazelinia, Hossein, Singh, Larry N., Faryabi, Robert B., Raman, Pichai, Dawany, Noor, Xie, Hongbo Michael, Devkota, Batsal, Diskin, Sharon J., Anderson, Stewart A., Rappaport, Eric F., Peranteau, William, Wikenheiser-Brokamp, Kathryn A., Teichmann, Sarah, Wallace, Douglas, Peng, Tao, Ding, Yang-yang, Kim, Man S., Xing, Yi, Kong, Sek Won, Bönnemann, Carsten G., Mandl, Kenneth D., White, Peter S.
Veröffentlicht in Dev Cell (2019)