The catalytic mechanism of Escherichia coli endonuclease VIII: Roles of the intercalation loop and the zinc finger

Por Kropachev, Konstantin Y., Zharkov, Dmitry O., Grollman, Arthur P.
Publicado em 2006

Exploring Damage Recognition Models in Prokaryotic Nucleotide Excision Repair with a Benzo[a]pyrene-Derived Lesion in UvrB

Por Jia, Lei, Kropachev, Konstantin, Ding, Shuang, Van Houten, Bennett, Geacintov, Nicholas E., Broyde, Suse
Publicado em 2009

The role of structural and energetic factors in regulating repair of a bulky DNA lesion with different opposite partner bases()

Por Mu, Hong, Kropachev, Konstantin, Chen, Ying, Zhang, Hong, Cai, Yuqin, Geacintov, Nicholas E., Broyde, Suse
Publicado em 2013

Resistance to Nucleotide Excision Repair of Bulky Guanine Adducts Opposite Abasic Sites in DNA Duplexes and Relationships between Structure and Function

Por Liu, Zhi, Ding, Shuang, Kropachev, Konstantin, Lei, Jia, Amin, Shantu, Broyde, Suse, Geacintov, Nicholas E.
Publicado no PLoS One (2015)

Correction: Resistance to Nucleotide Excision Repair of Bulky Guanine Adducts Opposite Abasic Sites in DNA Duplexes and Relationships between Structure and Function

Por Liu, Zhi, Ding, Shuang, Kropachev, Konstantin, Jia, Lei, Amin, Shantu, Broyde, Suse, Geacintov, Nicholas E.
Publicado no PLoS One (2015)

Generation of Guanine -Thymine Crosslinks in Human Cells by One-Electron Oxidation Mechanisms

Por Madugundu, Guru S., Wagner, Richard, Cadet, Jean, Kropachev, Konstantin, Yun, Byeong Hwa, Geacintov, Nicholas E., Shafirovich, Vladimir
Publicado em 2013

Nucleotide excision repair of 2-acetylaminofluorene- and 2-aminofluorene-(C8)-guanine adducts: molecular dynamics simulations elucidate how lesion structure and base sequence conte...

Por Mu, Hong, Kropachev, Konstantin, Wang, Lihua, Zhang, Lu, Kolbanovskiy, Alexander, Kolbanovskiy, Marina, E. Geacintov, Nicholas, Broyde, Suse
Publicado em 2012

Differences in the Access of Lesions to the Nucleotide Excision Repair Machinery in Nucleosomes

Por Cai, Yuqin, Kropachev, Konstantin, Terzidis, Michael A., Masi, Annalisa, Chatgilialoglu, Chryssostomos, Shafirovich, Vladimir, Geacintov, Nicholas E., Broyde, Suse
Publicado no Biochemistry (2015)

The human DNA repair factor XPC-HR23B distinguishes stereoisomeric benzo[a]pyrenyl-DNA lesions

Por Mocquet, Vincent, Kropachev, Konstantin, Kolbanovskiy, Marina, Kolbanovskiy, Alexander, Tapias, Angels, Cai, Yuqin, Broyde, Suse, Geacintov, Nicholas E, Egly, Jean-Marc
Publicado em 2007

Structural, energetic and dynamic properties of guanine(C8)–thymine(N3) cross-links in DNA provide insights on susceptibility to nucleotide excision repair

Por Ding, Shuang, Kropachev, Konstantin, Cai, Yuqin, Kolbanovskiy, Marina, Durandina, Svetlana A., Liu, Zhi, Shafirovich, Vladimir, Broyde, Suse, Geacintov, Nicholas E.
Publicado em 2012

Inefficient Nucleotide Excision Repair in Human Cell Extracts of the N-(Deoxyguanosin-8-yl)-6-Aminochrysene and 5-(Deoxyguanosin-N(2)-yl)-6-Aminochrysene Adducts Derived from 6-Nit...

Por Krzeminski, Jacek, Kropachev, Konstantin, Kolbanovskiy, Marina, Reeves, Dara, Kolbanovskiy, Alexander, Yun, Byeong-Hwa, Geacintov, Nicholas E., Amin, Shantu, El-Bayoumy, Karam
Publicado em 2010

Distant neighbor base sequence context effects in human nucleotide excision repair of a benzo[a]pyrene-derived DNA lesion

Por Cai, Yuqin, Kropachev, Konstantin, Xu, Rong, Tang, Yijin, Kolbanovskii, Marina, Kolbanovskii, Alexander, Amin, Shantu, Patel, Dinshaw J., Broyde, Suse, Geacintov, Nicholas E.
Publicado em 2010

The Sequence Dependence of Human Nucleotide Excision Repair Efficiencies of Benzo[a]pyrene-Derived DNA Lesions: Insights into the Structural Factors that Favor Dual Incisions

Por Kropachev, Konstantin, Kolbanovskii, Marina, Cai, Yuqin, Rodríguez, Fabian, Kolbanovskii, Alexander, Liu, Yang, Zhang, Lu, Amin, Shantu, Patel, Dinshaw, Broyde, Suse, Geacintov, Nicholas E.
Publicado em 2009

Base Flipping Free Energy Profiles for Damaged and Undamaged DNA

Por Zheng, Han, Cai, Yuqin, Ding, Shuang, Tang, Yijin, Kropachev, Konstantin, Zhou, Yanzi, Wang, Lihua, Wang, Shenglong, Geacintov, Nicholas E., Zhang, Yingkai, Broyde, Suse
Publicado em 2010

An Adenine-DNA Adduct Derived from Nitroreduction of 6-Nitrochrysene is more Resistant to Nucleotide Excision Repair than Guanine-DNA Adducts

Por Krzeminski, Jacek, Kropachev, Konstantin, Reeves, Dara, Kolbanovskiy, Aleksandr, Kolbanovskiy, Marina, Chen, Kun-Ming, Sharma, Arun K., Geacintov, Nicholas, Amin, Shantu, El-Bayoumy, Karam
Publicado em 2013

Adenine-DNA adducts derived from the highly tumorigenic dibenzo[a,l]pyrene are resistant to nucleotide excision repair while guanine adducts are not

Por Kropachev, Konstantin, Kolbanovskiy, Marina, Liu, Zhi, Cai, Yuqin, Zhang, Lu, Schwaid, Adam G., Kolbanovskiy, Alexander, Ding, Shuang, Amin, Shantu, Broyde, Suse, Geacintov, Nicholas E.
Publicado em 2013

Free energy profiles of base flipping in intercalative polycyclic aromatic hydrocarbon-damaged DNA duplexes: Energetic and structural relationships to nucleotide excision repair su...

Por Cai, Yuqin, Zheng, Han, Ding, Shuang, Kropachev, Konstantin, Schwaid, Adam G., Tang, Yijin, Mu, Hong, Wang, Shenglong, Geacintov, Nicholas E., Zhang, Yingkai, Broyde, Suse
Publicado em 2013

Structural basis for the recognition of diastereomeric 5′,8-cyclo-2′-deoxypurine lesions by the human nucleotide excision repair system

Por Kropachev, Konstantin, Ding, Shuang, Terzidis, Michael A., Masi, Annalisa, Liu, Zhi, Cai, Yuqin, Kolbanovskiy, Marina, Chatgilialoglu, Chryssostomos, Broyde, Suse, Geacintov, Nicholas E., Shafirovich, Vladimir
Publicado em 2014

Probing for DNA damage with β-hairpins: Similarities in incision efficiencies of bulky DNA adducts by prokaryotic and human nucleotide excision repair systems in vitro

Por Liu, Yang, Reeves, Dara, Kropachev, Konstantin, Cai, Yuqin, Ding, Shuang, Kolbanovskiy, Marina, Kolbanovskiy, Alexander, Bolton, Judith L., Broyde, Suse, Van Houten, Bennett, Geacintov, Nicholas E.
Publicado em 2011

Base and Nucleotide Excision Repair of Oxidatively Generated Guanine Lesions in DNA

Por Shafirovich, Vladimir, Kropachev, Konstantin, Anderson, Thomas, Liu, Zhi, Kolbanovskiy, Marina, Martin, Brooke D., Sugden, Kent, Shim, Yoonjung, Chen, Xuejing, Min, Jung-Hyun, Geacintov, Nicholas E.
Publicado no J Biol Chem (2016)