Nucleotide excision repair efficiencies of bulky carcinogen-DNA adducts are governed by a balance between stabilizing and destabilizing interactions

Bằng Cai, Yuqin, Geacintov, Nicholas E., Broyde, Suse
Được phát hành 2012

Ribonucleotides as nucleotide excision repair substrates

Bằng Cai, Yuqin, Geacintov, Nicholas E., Broyde, Suse
Xuất bản năm DNA Repair (Amst) (2013)

Variable impact of conformationally distinct DNA lesions on nucleosome structure and dynamics: Implications for nucleotide excision repair

Bằng Cai, Yuqin, Geacintov, Nicholas E., Broyde, Suse
Xuất bản năm DNA Repair (Amst) (2019)

Intercalative Conformations of the 14R (+)- and 14S (–)-trans-anti-DB[a,l]P-N(6)-dA Adducts: Molecular Modeling and MD Simulations

Bằng Cai, Yuqin, Ding, Shuang, Geacintov, Nicholas E., Broyde, Suse
Được phát hành 2011

Differential Nucleotide Excision Repair Susceptibility of Bulky DNA Adducts in Different Sequence Contexts: Hierarchies of Recognition Signals

Bằng Cai, Yuqin, Patel, Dinshaw J., Geacintov, Nicholas E., Broyde, Suse
Được phát hành 2008

Base Sequence Context Effects on Nucleotide Excision Repair

Bằng Cai, Yuqin, Patel, Dinshaw J., Broyde, Suse, Geacintov, Nicholas E.
Được phát hành 2010

Dynamics of a Benzo[a]pyrene-derived Guanine DNA Lesion in TGT and CGC Sequence Contexts: Enhanced Mobility in TGT Explains Conformational Heterogeneity, Flexible Bending, and Grea...

Bằng Cai, Yuqin, Patel, Dinshaw J., Geacintov, Nicholas E., Broyde, Suse
Xuất bản năm J Mol Biol (2007)

Conformational Properties of Equilenin-DNA Adducts: Stereoisomer and Base Effects

Bằng Ding, Shuang, Shapiro, Robert, Cai, Yuqin, Geacintov, Nicholas E., Broyde, Suse
Được phát hành 2008

Entrapment of a Histone Tail by a DNA Lesion in a Nucleosome Suggests the Lesion Impacts Epigenetic Marking: A Molecular Dynamics Study

Bằng Fu, Iwen, Cai, Yuqin, Zhang, Yingkai, Geacintov, Nicholas E., Broyde, Suse
Xuất bản năm Biochemistry (2015)

Nucleosome histone tail conformation and dynamics: impacts of lysine acetylation and a nearby minor groove benzo[a]pyrene-derived lesion

Bằng Fu, Iwen, Cai, Yuqin, Geacintov, Nicholas E., Zhang, Yingkai, Broyde, Suse
Xuất bản năm Biochemistry (2017)

Synergistic effects of H3 and H4 nucleosome tails on structure and dynamics of a lesion-containing DNA: Binding of a displaced lesion partner base to the H3 tail for GG-NER recogni...

Bằng Cai, Yuqin, Fu, Iwen, Geacintov, Nicholas E., Zhang, Yingkai, Broyde, Suse
Xuất bản năm DNA Repair (Amst) (2018)

A bulky DNA lesion derived from a highly potent polycyclic aromatic tumorigen stabilizes nucleosome core particle structure

Bằng Cai, Yuqin, Wang, Lihua, Ding, Shuang, Schwaid, Adam, Geacintov, Nicholas E., Broyde, Suse
Được phát hành 2010

The role of structural and energetic factors in regulating repair of a bulky DNA lesion with different opposite partner bases()

Bằng Mu, Hong, Kropachev, Konstantin, Chen, Ying, Zhang, Hong, Cai, Yuqin, Geacintov, Nicholas E., Broyde, Suse
Được phát hành 2013

Differences in the Access of Lesions to the Nucleotide Excision Repair Machinery in Nucleosomes

Bằng Cai, Yuqin, Kropachev, Konstantin, Terzidis, Michael A., Masi, Annalisa, Chatgilialoglu, Chryssostomos, Shafirovich, Vladimir, Geacintov, Nicholas E., Broyde, Suse
Xuất bản năm Biochemistry (2015)

The relationships between XPC binding to conformationally diverse DNA adducts and their excision by the human NER system: is there a correlation?

Bằng Lee, Yuan-Cho, Cai, Yuqin, Mu, Hong, Broyde, Suse, Amin, Shantu, Chen, Xuejing, Min, Jung-Hyun, Geacintov, Nicholas E.
Được phát hành 2014

The human DNA repair factor XPC-HR23B distinguishes stereoisomeric benzo[a]pyrenyl-DNA lesions

Bằng Mocquet, Vincent, Kropachev, Konstantin, Kolbanovskiy, Marina, Kolbanovskiy, Alexander, Tapias, Angels, Cai, Yuqin, Broyde, Suse, Geacintov, Nicholas E, Egly, Jean-Marc
Được phát hành 2007

Structural, energetic and dynamic properties of guanine(C8)–thymine(N3) cross-links in DNA provide insights on susceptibility to nucleotide excision repair

Bằng Ding, Shuang, Kropachev, Konstantin, Cai, Yuqin, Kolbanovskiy, Marina, Durandina, Svetlana A., Liu, Zhi, Shafirovich, Vladimir, Broyde, Suse, Geacintov, Nicholas E.
Được phát hành 2012

Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions...

Bằng Rodríguez, Fabián A., Cai, Yuqin, Lin, Chin, Tang, Yijin, Kolbanovskiy, Alexander, Amin, Shantu, Patel, Dinshaw J., Broyde, Suse, Geacintov, Nicholas E.
Được phát hành 2007

Distant neighbor base sequence context effects in human nucleotide excision repair of a benzo[a]pyrene-derived DNA lesion

Bằng Cai, Yuqin, Kropachev, Konstantin, Xu, Rong, Tang, Yijin, Kolbanovskii, Marina, Kolbanovskii, Alexander, Amin, Shantu, Patel, Dinshaw J., Broyde, Suse, Geacintov, Nicholas E.
Được phát hành 2010

The Sequence Dependence of Human Nucleotide Excision Repair Efficiencies of Benzo[a]pyrene-Derived DNA Lesions: Insights into the Structural Factors that Favor Dual Incisions

Bằng Kropachev, Konstantin, Kolbanovskii, Marina, Cai, Yuqin, Rodríguez, Fabian, Kolbanovskii, Alexander, Liu, Yang, Zhang, Lu, Amin, Shantu, Patel, Dinshaw, Broyde, Suse, Geacintov, Nicholas E.
Được phát hành 2009