Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung

door Gawronski, Jeffrey D., Wong, Sandy M. S., Giannoukos, Georgia, Ward, Doyle V., Akerley, Brian J.
Gepubliceerd in 2009

Quality scores and SNP detection in sequencing-by-synthesis systems

door Brockman, William, Alvarez, Pablo, Young, Sarah, Garber, Manuel, Giannoukos, Georgia, Lee, William L., Russ, Carsten, Lander, Eric S., Nusbaum, Chad, Jaffe, David B.
Gepubliceerd in 2008

Evaluation of bacterial ribosomal RNA (rRNA) depletion methods for sequencing microbial community transcriptomes

door Ciulla, Dawn, Giannoukos, Georgia, Earl, Ashlee, Feldgarden, Michael, Gevers, Dirk, Levin, Joshua, Livny, Jonathan, Ward, Doyle, Gnirke, Andreas, Nusbaum, Chad, Birren, Bruce
Gepubliceerd in 2010

Solution Hybrid Selection with Ultra-long Oligonucleotides for Massively Parallel Targeted Sequencing

door Gnirke, Andreas, Melnikov, Alexandre, Maguire, Jared, Rogov, Peter, LeProust, Emily M., Brockman, William, Fennell, Timothy, Giannoukos, Georgia, Fisher, Sheila, Russ, Carsten, Gabriel, Stacey, Jaffe, David B., Lander, Eric S., Nusbaum, Chad
Gepubliceerd in 2009

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

door Giannoukos, Georgia, Ciulla, Dawn M, Huang, Katherine, Haas, Brian J, Izard, Jacques, Levin, Joshua Z, Livny, Jonathan, Earl, Ashlee M, Gevers, Dirk, Ward, Doyle V, Nusbaum, Chad, Birren, Bruce W, Gnirke, Andreas
Gepubliceerd in 2012

Relating the metatranscriptome and metagenome of the human gut

door Franzosa, Eric A., Morgan, Xochitl C., Segata, Nicola, Waldron, Levi, Reyes, Joshua, Earl, Ashlee M., Giannoukos, Georgia, Boylan, Matthew R., Ciulla, Dawn, Gevers, Dirk, Izard, Jacques, Garrett, Wendy S., Chan, Andrew T., Huttenhower, Curtis
Gepubliceerd in 2014

Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice

door Donaldson, Gregory P., Chou, Wen-Chi, Manson, Abigail L., Rogov, Peter, Abeel, Thomas, Bochicchio, James, Ciulla, Dawn, Melnikov, Alexandre, Ernst, Peter B., Chu, Hiutung, Giannoukos, Georgia, Earl, Ashlee M., Mazmanian, Sarkis K.
Gepubliceerd in Nat Microbiol (2020)

UDiTaS™, a genome editing detection method for indels and genome rearrangements

door Giannoukos, Georgia, Ciulla, Dawn M., Marco, Eugenio, Abdulkerim, Hayat S., Barrera, Luis A., Bothmer, Anne, Dhanapal, Vidya, Gloskowski, Sebastian W., Jayaram, Hariharan, Maeder, Morgan L., Skor, Maxwell N., Wang, Tongyao, Myer, Vic E., Wilson, Christopher J.
Gepubliceerd in BMC Genomics (2018)

Simultaneous generation of many RNA-seq libraries in a single reaction

door Shishkin, Alexander A, Giannoukos, Georgia, Kucukural, Alper, Ciulla, Dawn, Busby, Michele, Surka, Christine, Chen, Jenny, Bhattacharyya, Roby P, Rudy, Robert F, Patel, Milesh M, Novod, Nathaniel, Hung, Deborah T, Gnirke, Andreas, Garber, Manuel, Guttman, Mitchell, Livny, Jonathan
Gepubliceerd in Nat Methods (2015)

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

door Haas, Brian J., Gevers, Dirk, Earl, Ashlee M., Feldgarden, Mike, Ward, Doyle V., Giannoukos, Georgia, Ciulla, Dawn, Tabbaa, Diana, Highlander, Sarah K., Sodergren, Erica, Methé, Barbara, DeSantis, Todd Z., Petrosino, Joseph F., Knight, Rob, Birren, Bruce W.
Gepubliceerd in 2011

Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease

door Papa, Eliseo, Docktor, Michael, Smillie, Christopher, Weber, Sarah, Preheim, Sarah P., Gevers, Dirk, Giannoukos, Georgia, Ciulla, Dawn, Tabbaa, Diana, Ingram, Jay, Schauer, David B., Ward, Doyle V., Korzenik, Joshua R., Xavier, Ramnik J., Bousvaros, Athos, Alm, Eric J.
Gepubliceerd in 2012

Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes

door Henn, Matthew R., Sullivan, Matthew B., Stange-Thomann, Nicole, Osburne, Marcia S., Berlin, Aaron M., Kelly, Libusha, Yandava, Chandri, Kodira, Chinnappa, Zeng, Qiandong, Weiand, Michael, Sparrow, Todd, Saif, Sakina, Giannoukos, Georgia, Young, Sarah K., Nusbaum, Chad, Birren, Bruce W., Chisholm, Sallie W.
Gepubliceerd in 2010

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

door Mikkelsen, Tarjei S., Ku, Manching, Jaffe, David B., Issac, Biju, Lieberman, Erez, Giannoukos, Georgia, Alvarez, Pablo, Brockman, William, Kim, Tae-Kyung, Koche, Richard P., Lee, William, Mendenhall, Eric, O’Donovan, Aisling, Presser, Aviva, Russ, Carsten, Xie, Xiaohui, Meissner, Alexander, Wernig, Marius, Jaenisch, Rudolf, Nusbaum, Chad, Lander, Eric S., Bernstein, Bradley E.
Gepubliceerd in 2007

A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454

door Lennon, Niall J, Lintner, Robert E, Anderson, Scott, Alvarez, Pablo, Barry, Andrew, Brockman, William, Daza, Riza, Erlich, Rachel L, Giannoukos, Georgia, Green, Lisa, Hollinger, Andrew, Hoover, Cindi A, Jaffe, David B, Juhn, Frank, McCarthy, Danielle, Perrin, Danielle, Ponchner, Karen, Powers, Taryn L, Rizzolo, Kamran, Robbins, Dana, Ryan, Elizabeth, Russ, Carsten, Sparrow, Todd, Stalker, John, Steelman, Scott, Weiand, Michael, Zimmer, Andrew, Henn, Matthew R, Nusbaum, Chad, Nicol, Robert
Gepubliceerd in 2010

A framework for human microbiome research

door Methé, Barbara A., Nelson, Karen E., Pop, Mihai, Creasy, Heather H., Giglio, Michelle G., Huttenhower, Curtis, Gevers, Dirk, Petrosino, Joseph F., Abubucker, Sahar, Badger, Jonathan H., Chinwalla, Asif T., Earl, Ashlee M., FitzGerald, Michael G., Fulton, Robert S., Hallsworth-Pepin, Kymberlie, Lobos, Elizabeth A., Madupu, Ramana, Magrini, Vincent, Martin, John C., Mitreva, Makedonka, Muzny, Donna M., Sodergren, Erica J., Versalovic, James, Wollam, Aye M., Worley, Kim C., Wortman, Jennifer R., Young, Sarah K., Zeng, Qiandong, Aagaard, Kjersti M., Abolude, Olukemi O., Allen-Vercoe, Emma, Alm, Eric J., Alvarado, Lucia, Andersen, Gary L., Anderson, Scott, Appelbaum, Elizabeth, Arachchi, Harindra M., Armitage, Gary, Arze, Cesar A., Ayvaz, Tulin, Baker, Carl C., Begg, Lisa, Belachew, Tsegahiwot, Bhonagiri, Veena, Bihan, Monika, Blaser, Martin J., Bloom, Toby, Vivien Bonazzi, J., Brooks, Paul, Buck, Gregory A., Buhay, Christian J., Busam, Dana A., Campbell, Joseph L., Canon, Shane R., Cantarel, Brandi L., Chain, Patrick S., Chen, I-Min A., Chen, Lei, Chhibba, Shaila, Chu, Ken, Ciulla, Dawn M., Clemente, Jose C., Clifton, Sandra W., Conlan, Sean, Crabtree, Jonathan, Cutting, Mary A., Davidovics, Noam J., Davis, Catherine C., DeSantis, Todd Z., Deal, Carolyn, Delehaunty, Kimberley D., Dewhirst, Floyd E., Deych, Elena, Ding, Yan, Dooling, David J., Dugan, Shannon P., Dunne, Wm. Michael, Durkin, A. Scott, Edgar, Robert C., Erlich, Rachel L., Farmer, Candace N., Farrell, Ruth M., Faust, Karoline, Feldgarden, Michael, Felix, Victor M., Fisher, Sheila, Fodor, Anthony A., Forney, Larry, Foster, Leslie, Di Francesco, Valentina, Friedman, Jonathan, Friedrich, Dennis C., Fronick, Catrina C., Fulton, Lucinda L., Gao, Hongyu, Garcia, Nathalia, Giannoukos, Georgia, Giblin, Christina, Giovanni, Maria Y., Goldberg, Jonathan M., Goll, Johannes, Gonzalez, Antonio, Griggs, Allison, Gujja, Sharvari, Haas, Brian J., Hamilton, Holli A., Harris, Emily L., Hepburn, Theresa A., Herter, Brandi, Hoffmann, Diane E., Holder, Michael E., Howarth, Clinton, Huang, Katherine H., Huse, Susan M., Izard, Jacques, Jansson, Janet K., Jiang, Huaiyang, Jordan, Catherine, Joshi, Vandita, Katancik, James A., Keitel, Wendy A., Kelley, Scott T., Kells, Cristyn, Kinder-Haake, Susan, King, Nicholas B., Knight, Rob, Knights, Dan, Kong, Heidi H., Koren, Omry, Koren, Sergey, Kota, Karthik C., Kovar, Christie L., Kyrpides, Nikos C., La Rosa, Patricio S., Lee, Sandra L., Lemon, Katherine P., Lennon, Niall, Lewis, Cecil M., Lewis, Lora, Ley, Ruth E., Li, Kelvin, Liolios, Konstantinos, Liu, Bo, Liu, Yue, Lo, Chien-Chi, Lozupone, Catherine A., Lunsford, R. Dwayne, Madden, Tessa, Mahurkar, Anup A., Mannon, Peter J., Mardis, Elaine R., Markowitz, Victor M., Mavrommatis, Konstantinos, McCorrison, Jamison M., McDonald, Daniel, McEwen, Jean, McGuire, Amy L., McInnes, Pamela, Mehta, Teena, Mihindukulasuriya, Kathie A., Miller, Jason R., Minx, Patrick J., Newsham, Irene, Nusbaum, Chad, O’Laughlin, Michelle, Orvis, Joshua, Pagani, Ioanna, Palaniappan, Krishna, Patel, Shital M., Pearson, Matthew, Peterson, Jane, Podar, Mircea, Pohl, Craig, Pollard, Katherine S., Priest, Margaret E., Proctor, Lita M., Qin, Xiang, Raes, Jeroen, Ravel, Jacques, Reid, Jeffrey G., Rho, Mina, Rhodes, Rosamond, Riehle, Kevin P., Rivera, Maria C., Rodriguez-Mueller, Beltran, Rogers, Yu-Hui, Ross, Matthew C., Russ, Carsten, Sanka, Ravi K., Pamela Sankar, J., Sathirapongsasuti, Fah, Schloss, Jeffery A., Schloss, Patrick D., Schmidt, Thomas M., Scholz, Matthew, Schriml, Lynn, Schubert, Alyxandria M., Segata, Nicola, Segre, Julia A., Shannon, William D., Sharp, Richard R., Sharpton, Thomas J., Shenoy, Narmada, Sheth, Nihar U., Simone, Gina A., Singh, Indresh, Smillie, Chris S., Sobel, Jack D., Sommer, Daniel D., Spicer, Paul, Sutton, Granger G., Sykes, Sean M., Tabbaa, Diana G., Thiagarajan, Mathangi, Tomlinson, Chad M., Torralba, Manolito, Treangen, Todd J., Truty, Rebecca M., Vishnivetskaya, Tatiana A., Walker, Jason, Wang, Lu, Wang, Zhengyuan, Ward, Doyle V., Warren, Wesley, Watson, Mark A., Wellington, Christopher, Wetterstrand, Kris A., White, James R., Wilczek-Boney, Katarzyna, Wu, Yuan Qing, Wylie, Kristine M., Wylie, Todd, Yandava, Chandri, Ye, Liang, Ye, Yuzhen, Yooseph, Shibu, Youmans, Bonnie P., Zhang, Lan, Zhou, Yanjiao, Zhu, Yiming, Zoloth, Laurie, Zucker, Jeremy D., Birren, Bruce W., Gibbs, Richard A., Highlander, Sarah K., Weinstock, George M., Wilson, Richard K., White, Owen
Gepubliceerd in 2012