Zooming in on Inflammatory Bowel Disease: Microbial and Proteomic Features Associated With IBD in Colonic Microenvironments

af Tamburini, Sabrina, Clemente, Jose C.
Udgivet i Cell Mol Gastroenterol Hepatol (2016)

Flexible taxonomic assignment of ambiguous sequencing reads

af Clemente, José C, Jansson, Jesper, Valiente, Gabriel
Udgivet 2011

Physical Activity, Immune System, and the Microbiome in Cardiovascular Disease

af Fernandez, Dawn M., Clemente, Jose C., Giannarelli, Chiara
Udgivet i Front Physiol (2018)

The role of the gut microbiome in systemic inflammatory disease

af Clemente, Jose C, Manasson, Julia, Scher, Jose U
Udgivet i BMJ (2018)

Optimized ancestral state reconstruction using Sankoff parsimony

af Clemente, José C, Ikeo, Kazuho, Valiente, Gabriel, Gojobori, Takashi
Udgivet 2009

Detecting and phasing minor single-nucleotide variants from long-read sequencing data

af Feng, Zhixing, Clemente, Jose C., Wong, Brandon, Schadt, Eric E.
Udgivet i Nat Commun (2021)

The Impact of the Gut Microbiota on Human Health: An Integrative View

af Clemente, Jose C., Ursell, Luke K., Parfrey, Laura Wegener, Knight, Rob
Udgivet i Cell (2012)

The prenatal gut microbiome: Are we colonized with bacteria in utero?

af Walker, Ryan W, Clemente, Jose C, Peter, Inga, Loos, Ruth JF
Udgivet i Pediatr Obes (2017)

UCHIME improves sensitivity and speed of chimera detection

af Edgar, Robert C., Haas, Brian J., Clemente, Jose C., Quince, Christopher, Knight, Rob
Udgivet 2011

Changes in vaginal microbiota following antimicrobial and probiotic therapy

af Macklaim, Jean M., Clemente, Jose C., Knight, Rob, Gloor, Gregory B., Reid, Gregor
Udgivet i Microb Ecol Health Dis (2015)

Ordered Processing of the Human Immunodeficiency Virus Type 1 GagPol Precursor Is Influenced by the Context of the Embedded Viral Protease

af Pettit, Steven C., Clemente, Jose C., Jeung, Jennifer A., Dunn, Ben M., Kaplan, Andrew H.
Udgivet 2005

The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites

af Ursell, Luke K, Clemente, Jose C, Rideout, Jai Ram, Gevers, Dirk, Caporaso, J Gregory, Knight, Rob
Udgivet 2012

Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities

af Kittelmann, Sandra, Seedorf, Henning, Walters, William A., Clemente, Jose C., Knight, Rob, Gordon, Jeffrey I., Janssen, Peter H.
Udgivet 2013

Global biogeography of highly diverse protistan communities in soil

af Bates, Scott T, Clemente, Jose C, Flores, Gilberto E, Walters, William Anthony, Parfrey, Laura Wegener, Knight, Rob, Fierer, Noah
Udgivet 2013

Experimental and analytical tools for studying the human microbiome

af Kuczynski, Justin, Lauber, Christian L., Walters, William A., Parfrey, Laura Wegener, Clemente, José C., Gevers, Dirk, Knight, Rob
Udgivet i Nat Rev Genet (2011)

Our microbial selves: what ecology can teach us

af Gonzalez, Antonio, Clemente, Jose C, Shade, Ashley, Metcalf, Jessica L, Song, Sejin, Prithiviraj, Bharath, Palmer, Brent E, Knight, Rob
Udgivet 2011

Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood

af Stahringer, Simone S., Clemente, Jose C., Corley, Robin P., Hewitt, John, Knights, Dan, Walters, William A., Knight, Rob, Krauter, Kenneth S.
Udgivet 2012

Gut microbiome of mothers delivering prematurely shows reduced diversity and lower relative abundance of Bifidobacterium and Streptococcus

af Dahl, Cecilie, Stanislawski, Maggie, Iszatt, Nina, Mandal, Siddhartha, Lozupone, Catherine, Clemente, Jose C., Knight, Rob, Stigum, Hein, Eggesbø, Merete
Udgivet i PLoS One (2017)

Longitudinal changes of microbiome composition and microbial metabolomics after surgical weight loss in individuals with obesity

af Shen, Nan, Caixàs, Assumpta, Ahlers, Michael, Patel, Kapila, Gao, Zhan, Dutia, Roxanne, Blaser, Martin J., Clemente, Jose C., Laferrère, Blandine
Udgivet i Surg Obes Relat Dis (2019)

Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation

af Zaneveld, Jesse RR., Parfrey, Laura Wegener, Van Treuren, Will, Lozupone, Catherine, Clemente, Jose C., Knights, Dan, Stombaugh, Jesse, Kuczynski, Justin, Knight, Rob
Udgivet 2011