Xenobiotics and the human gut microbiome: metatranscriptomics reveal the active players

by Ursell, Luke K., Knight, Rob
Published 2013

Defining the Human Microbiome

by Ursell, Luke K, Metcalf, Jessica L, Parfrey, Laura Wegener, Knight, Rob
Published 2012

The Impact of the Gut Microbiota on Human Health: An Integrative View

by Clemente, Jose C., Ursell, Luke K., Parfrey, Laura Wegener, Knight, Rob
Published in Cell (2012)

Replenishing our defensive microbes

by Ursell, Luke K., Van Treuren, William, Metcalf, Jessica L., Pirrung, Meg, Gewirtz, Andrew, Knight, Rob
Published 2013

The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites

by Ursell, Luke K, Clemente, Jose C, Rideout, Jai Ram, Gevers, Dirk, Caporaso, J Gregory, Knight, Rob
Published 2012

Glycan Degradation (GlyDeR) Analysis Predicts Mammalian Gut Microbiota Abundance and Host Diet-Specific Adaptations

by Eilam, Omer, Zarecki, Raphy, Oberhardt, Matthew, Ursell, Luke K., Kupiec, Martin, Knight, Rob, Gophna, Uri, Ruppin, Eytan
Published 2014

The Intestinal Metabolome—an Intersection Between Microbiota and Host

by Ursell, Luke K., Haiser, Henry J., Van Treuren, Will, Garg, Neha, Reddivari, Lavanya, Vanamala, Jairam, Dorrestein, Pieter C., Turnbaugh, Peter J., Knight, Rob
Published 2014

Comparison of the Vaginal Microbial Communities in Women with Recurrent Genital HSV Receiving Acyclovir Intravaginal Rings

by Ursell, Luke K., Gunawardana, Manjula, Chang, Simon, Mullen, Madeline, Moss, John A., Herold, Betsy C., Keller, Marla J., McDonald, Daniel, González, Antonio, Knight, Rob, Baum, Marc M.
Published 2013

Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota

by Kashyap, Purna C., Marcobal, Angela, Ursell, Luke K., Smits, Samuel A., Sonnenburg, Erica D., Costello, Elizabeth K., Higginbottom, Steven K., Domino, Steven E., Holmes, Susan P., Relman, David A., Knight, Rob, Gordon, Jeffrey I., Sonnenburg, Justin L.
Published 2013

Complex Interactions Among Diet, Gastrointestinal Transit, and Gut Microbiota in Humanized Mice

by Kashyap, Purna C., Marcobal, Angela, Ursell, Luke K., Larauche, Muriel, Duboc, Henri, Earle, Kristen A., Sonnenburg, Erica D., Ferreyra, Jessica A., Higginbottom, Steven K., Million, Mulugeta, Tache, Yvette, Pasricha, Pankaj J., Knight, Rob, Farrugia, Gianrico, Sonnenburg, Jusin l.
Published 2013

Gut microbiomes of Malawian twin pairs discordant for kwashiorkor

by Smith, Michelle I., Yatsunenko, Tanya, Manary, Mark J., Trehan, Indi, Mkakosya, Rajhab, Cheng, Jiye, Kau, Andrew L., Rich, Stephen S., Concannon, Patrick, Mychaleckyj, Josyf C., Liu, Jie, Houpt, Eric, Li, Jia V., Holmes, Elaine, Nicholson, Jeremy, Knights, Dan, Ursell, Luke K., Knight, Rob, Gordon, Jeffrey I.
Published 2013

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

by Rideout, Jai Ram, He, Yan, Navas-Molina, Jose A., Walters, William A., Ursell, Luke K., Gibbons, Sean M., Chase, John, McDonald, Daniel, Gonzalez, Antonio, Robbins-Pianka, Adam, Clemente, Jose C., Gilbert, Jack A., Huse, Susan M., Zhou, Hong-Wei, Knight, Rob, Caporaso, J. Gregory
Published 2014

Advancing our understanding of the human microbiome using QIIME

by Navas-Molina, José A., Peralta-Sánchez, Juan M., González, Antonio, McMurdie, Paul J., Vázquez-Baeza, Yoshiki, Xu, Zhenjiang, Ursell, Luke K., Lauber, Christian, Zhou, Hongwei, Song, Se Jin, Huntley, James, Ackermann, Gail L., Berg-Lyons, Donna, Holmes, Susan, Caporaso, J. Gregory, Knight, Rob
Published in Methods Enzymol (2013)

Bacteria from diverse habitats colonize and compete in the mouse gut

by Seedorf, Henning, Griffin, Nicholas W., Ridaura, Vanessa K., Reyes, Alejandro, Cheng, Jiye, Rey, Federico E., Smith, Michelle I., Simon, Gabriel M., Scheffrahn, Rudolf H., Woebken, Dagmar, Spormann, Alfred M., Van Treuren, William, Ursell, Luke K., Pirrung, Megan, Robbins-Pianka, Adam, Cantarel, Brandi L., Lombard, Vincent, Henrissat, Bernard, Knight, Rob, Gordon, Jeffrey I.
Published 2014

Longitudinal analysis of microbial interaction between humans and the indoor environment

by Lax, Simon, Smith, Daniel P., Hampton-Marcell, Jarrad, Owens, Sarah M., Handley, Kim M., Scott, Nicole M., Gibbons, Sean M., Larsen, Peter, Shogan, Benjamin D., Weiss, Sophie, Metcalf, Jessica L., Ursell, Luke K., Vázquez-Baeza, Yoshiki, Van Treuren, Will, Hasan, Nur A., Gibson, Molly K., Colwell, Rita, Dantas, Gautam, Knight, Rob, Gilbert, Jack A.
Published in Science (2014)

Subsistence strategies in traditional societies distinguish gut microbiomes

by Obregon-Tito, Alexandra J., Tito, Raul Y., Metcalf, Jessica, Sankaranarayanan, Krithivasan, Clemente, Jose C., Ursell, Luke K., Zech Xu, Zhenjiang, Van Treuren, Will, Knight, Rob, Gaffney, Patrick M., Spicer, Paul, Lawson, Paul, Marin-Reyes, Luis, Trujillo-Villarroel, Omar, Foster, Morris, Guija-Poma, Emilio, Troncoso-Corzo, Luzmila, Warinner, Christina, Ozga, Andrew T., Lewis, Cecil M.
Published in Nat Commun (2015)

Genetic Control of Obesity and Gut Microbiota Composition in Response to High-Fat, High-Sucrose Diet in Mice

by Parks, Brian W., Nam, Elizabeth, Org, Elin, Kostem, Emrah, Norheim, Frode, Hui, Simon T., Pan, Calvin, Civelek, Mete, Rau, Christoph D., Bennett, Brian J., Mehrabian, Margarete, Ursell, Luke K., He, Aiqing, Castellani, Lawrence W., Zinker, Bradley, Kirby, Mark, Drake, Thomas A., Drevon, Christian A., Knight, Rob, Gargalovic, Peter, Kirchgessner, Todd, Eskin, Eleazar, Lusis, Aldons J.
Published 2013

Cultured gut microbiota from twins discordant for obesity modulate adiposity and metabolic phenotypes in mice

by Ridaura, Vanessa K., Faith, Jeremiah J., Rey, Federico E., Cheng, Jiye, Duncan, Alexis E., Kau, Andrew L., Griffin, Nicholas W., Lombard, Vincent, Henrissat, Bernard, Bain, James R., Muehlbauer, Michael J., Ilkayeva, Olga, Semenkovich, Clay F., Funai, Katsuhiko, Hayashi, David K., Lyle, Barbara J., Martini, Margaret C., Ursell, Luke K., Clemente, Jose C., Van Treuren, William, Walters, William A., Knight, Rob, Newgard, Christopher B., Heath, Andrew C., Gordon, Jeffrey I.
Published 2013