Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping

Por Amir, Amnon, McDonald, Daniel, Navas-Molina, Jose A., Debelius, Justine, Morton, James T., Hyde, Embriette, Robbins-Pianka, Adam, Knight, Rob
Publicado no mSystems (2017)

Open-Source Sequence Clustering Methods Improve the State Of the Art

Por Kopylova, Evguenia, Navas-Molina, Jose A., Mercier, Céline, Xu, Zhenjiang Zech, Mahé, Frédéric, He, Yan, Zhou, Hong-Wei, Rognes, Torbjørn, Caporaso, J. Gregory, Knight, Rob
Publicado no mSystems (2016)

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

Por Amir, Amnon, McDonald, Daniel, Navas-Molina, Jose A., Kopylova, Evguenia, Morton, James T., Zech Xu, Zhenjiang, Kightley, Eric P., Thompson, Luke R., Hyde, Embriette R., Gonzalez, Antonio, Knight, Rob
Publicado no mSystems (2017)

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information

Por Janssen, Stefan, McDonald, Daniel, Gonzalez, Antonio, Navas-Molina, Jose A., Jiang, Lingjing, Xu, Zhenjiang Zech, Winker, Kevin, Kado, Deborah M., Orwoll, Eric, Manary, Mark, Mirarab, Siavash, Knight, Rob
Publicado no mSystems (2018)

The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat

Por Hyde, Embriette R., Navas-Molina, Jose A., Song, Se Jin, Kueneman, Jordan G., Ackermann, Gail, Cardona, Cesar, Humphrey, Gregory, Boyer, Don, Weaver, Tom, Mendelson, Joseph R., McKenzie, Valerie J., Gilbert, Jack A., Knight, Rob
Publicado no mSystems (2016)

Balance Trees Reveal Microbial Niche Differentiation

Por Morton, James T., Sanders, Jon, Quinn, Robert A., McDonald, Daniel, Gonzalez, Antonio, Vázquez-Baeza, Yoshiki, Navas-Molina, Jose A., Song, Se Jin, Metcalf, Jessica L., Hyde, Embriette R., Lladser, Manuel, Dorrestein, Pieter C., Knight, Rob
Publicado no mSystems (2017)

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

Por Rideout, Jai Ram, He, Yan, Navas-Molina, Jose A., Walters, William A., Ursell, Luke K., Gibbons, Sean M., Chase, John, McDonald, Daniel, Gonzalez, Antonio, Robbins-Pianka, Adam, Clemente, Jose C., Gilbert, Jack A., Huse, Susan M., Zhou, Hong-Wei, Knight, Rob, Caporaso, J. Gregory
Publicado em 2014

Advancing our understanding of the human microbiome using QIIME

Por Navas-Molina, José A., Peralta-Sánchez, Juan M., González, Antonio, McMurdie, Paul J., Vázquez-Baeza, Yoshiki, Xu, Zhenjiang, Ursell, Luke K., Lauber, Christian, Zhou, Hongwei, Song, Se Jin, Huntley, James, Ackermann, Gail L., Berg-Lyons, Donna, Holmes, Susan, Caporaso, J. Gregory, Knight, Rob
Publicado no Methods Enzymol (2013)

From Sample to Multi-Omics Conclusions in under 48 Hours

Por Quinn, Robert A., Navas-Molina, Jose A., Hyde, Embriette R., Song, Se Jin, Vázquez-Baeza, Yoshiki, Humphrey, Greg, Gaffney, James, Minich, Jeremiah J., Melnik, Alexey V., Herschend, Jakob, DeReus, Jeff, Durant, Austin, Dutton, Rachel J., Khosroheidari, Mahdieh, Green, Clifford, da Silva, Ricardo, Dorrestein, Pieter C., Knight, Rob
Publicado no mSystems (2016)

Inflammation-induced IgA(+) cells dismantle anti-liver cancer immunity

Por Shalapour, Shabnam, Lin, Xue-Jia, Bastian, Ingmar N., Brain, John, Burt, Alastair D., Aksenov, Alexander A., Vrbanac, Alison F., Li, Weihua, Perkins, Andres, Matsutani, Takaji, Zhong, Zhenyu, Dhar, Debanjan, Navas-Molina, Jose A., Xu, Jun, Loomba, Rohit, Downes, Michael, Yu, Ruth T., Evans, Ronald M., Dorrestein, Pieter C., Knight, Rob, Benner, Christopher, Anstee, Quentin M., Karin, Michael
Publicado no Nature (2017)