Vertebrate Decomposition Is Accelerated by Soil Microbes

Tekijä Lauber, Christian L., Metcalf, Jessica L., Keepers, Kyle, Ackermann, Gail, Carter, David O., Knight, Rob
Julkaistu 2014

Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets

Tekijä Rideout, Jai Ram, Chase, John H., Bolyen, Evan, Ackermann, Gail, González, Antonio, Knight, Rob, Caporaso, J. Gregory
Julkaisussa Gigascience (2016)

redbiom: a Rapid Sample Discovery and Feature Characterization System

Tekijä McDonald, Daniel, Kaehler, Benjamin, Gonzalez, Antonio, DeReus, Jeff, Ackermann, Gail, Marotz, Clarisse, Huttley, Gavin, Knight, Rob
Julkaisussa mSystems (2019)

Meta-analyses of studies of the human microbiota

Tekijä Lozupone, Catherine A., Stombaugh, Jesse, Gonzalez, Antonio, Ackermann, Gail, Wendel, Doug, Vázquez-Baeza, Yoshiki, Jansson, Janet K., Gordon, Jeffrey I., Knight, Rob
Julkaistu 2013

Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition

Tekijä Marotz, Clarisse, Cavagnero, Kellen J., Song, Se Jin, McDonald, Daniel, Wandro, Stephen, Humphrey, Greg, Bryant, MacKenzie, Ackermann, Gail, Diaz, Edgar, Knight, Rob
Julkaisussa mSystems (2021)

Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems

Tekijä Potter, Caitlin, Freeman, Chris, Golyshin, Peter N., Ackermann, Gail, Fenner, Nathalie, McDonald, James E., Ehbair, Abdassalam, Jones, Timothy G., Murphy, Loretta M., Creer, Simon
Julkaisussa Sci Rep (2017)

Extreme Dysbiosis of the Microbiome in Critical Illness

Tekijä McDonald, Daniel, Ackermann, Gail, Khailova, Ludmila, Baird, Christine, Heyland, Daren, Kozar, Rosemary, Lemieux, Margot, Derenski, Karrie, King, Judy, Vis-Kampen, Christine, Knight, Rob, Wischmeyer, Paul E.
Julkaisussa mSphere (2016)

Vitamin D metabolites and the gut microbiome in older men

Tekijä Thomas, Robert L., Jiang, Lingjing, Adams, John S., Xu, Zhenjiang Zech, Shen, Jian, Janssen, Stefan, Ackermann, Gail, Vanderschueren, Dirk, Pauwels, Steven, Knight, Rob, Orwoll, Eric S., Kado, Deborah M.
Julkaisussa Nat Commun (2020)

Exposure to toxic metals triggers unique responses from the rat gut microbiota

Tekijä Richardson, Joshua B., Dancy, Blair C. R., Horton, Cassandra L., Lee, Young S., Madejczyk, Michael S., Xu, Zhenjiang Zech, Ackermann, Gail, Humphrey, Gregory, Palacios, Gustavo, Knight, Rob, Lewis, John A.
Julkaisussa Sci Rep (2018)

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

Tekijä Walters, William, Hyde, Embriette R., Berg-Lyons, Donna, Ackermann, Gail, Humphrey, Greg, Parada, Alma, Gilbert, Jack A., Jansson, Janet K., Caporaso, J. Gregory, Fuhrman, Jed A., Apprill, Amy, Knight, Rob
Julkaisussa mSystems (2015)

Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome

Tekijä Tripathi, Anupriya, Melnik, Alexey V., Xue, Jin, Poulsen, Orit, Meehan, Michael J., Humphrey, Gregory, Jiang, Lingjing, Ackermann, Gail, McDonald, Daniel, Zhou, Dan, Knight, Rob, Dorrestein, Pieter C., Haddad, Gabriel G.
Julkaisussa mSystems (2018)

Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems

Tekijä Tripathi, Anupriya, Xu, Zhenjiang Zech, Xue, Jin, Poulsen, Orit, Gonzalez, Antonio, Humphrey, Gregory, Meehan, Michael J., Melnik, Alexey V., Ackermann, Gail, Zhou, Dan, Malhotra, Atul, Haddad, Gabriel G., Dorrestein, Pieter C., Knight, Rob
Julkaisussa mSystems (2019)

The effect of legume supplementation on the gut microbiota in rural Malawian infants aged 6 to 12 months

Tekijä Ordiz, M Isabel, Janssen, Stefan, Humphrey, Greg, Ackermann, Gail, Stephenson, Kevin, Agapova, Sophia, Divala, Oscar, Kaimila, Yankho, Maleta, Ken, Zhong, Caroline, Knight, Rob, Trehan, Indi, Tarr, Phillip I, Rusconi, Brigida, Manary, Mark J
Julkaisussa Am J Clin Nutr (2020)

Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae

Tekijä Luzzatto-Knaan, Tal, Garg, Neha, Wang, Mingxun, Glukhov, Evgenia, Peng, Yao, Ackermann, Gail, Amir, Amnon, Duggan, Brendan M, Ryazanov, Sergey, Gerwick, Lena, Knight, Rob, Alexandrov, Theodore, Bandeira, Nuno, Gerwick, William H, Dorrestein, Pieter C
Julkaisussa eLife (2017)

The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat

Tekijä Hyde, Embriette R., Navas-Molina, Jose A., Song, Se Jin, Kueneman, Jordan G., Ackermann, Gail, Cardona, Cesar, Humphrey, Gregory, Boyer, Don, Weaver, Tom, Mendelson, Joseph R., McKenzie, Valerie J., Gilbert, Jack A., Knight, Rob
Julkaisussa mSystems (2016)

Niche partitioning of a pathogenic microbiome driven by chemical gradients

Tekijä Quinn, Robert A., Comstock, William, Zhang, Tianyu, Morton, James T., da Silva, Ricardo, Tran, Alda, Aksenov, Alexander, Nothias, Louis-Felix, Wangpraseurt, Daniel, Melnik, Alexey V., Ackermann, Gail, Conrad, Douglas, Klapper, Isaac, Knight, Rob, Dorrestein, Pieter C.
Julkaisussa Sci Adv (2018)

High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy

Tekijä Raghuvanshi, Ruma, Vasco, Karla, Vázquez-Baeza, Yoshiki, Jiang, Lingjing, Morton, James T., Li, Danxun, Gonzalez, Antonio, DeRight Goldasich, Lindsay, Humphrey, Gregory, Ackermann, Gail, Swafford, Austin D., Conrad, Douglas, Knight, Rob, Dorrestein, Pieter C., Quinn, Robert A.
Julkaisussa mSystems (2020)

A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system

Tekijä Metcalf, Jessica L, Wegener Parfrey, Laura, Gonzalez, Antonio, Lauber, Christian L, Knights, Dan, Ackermann, Gail, Humphrey, Gregory C, Gebert, Matthew J, Van Treuren, Will, Berg-Lyons, Donna, Keepers, Kyle, Guo, Yan, Bullard, James, Fierer, Noah, Carter, David O, Knight, Rob
Julkaistu 2013

Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection

Tekijä Mu, Andre, McDonald, Daniel, Jarmusch, Alan K., Martino, Cameron, Brennan, Caitriona, Bryant, Mackenzie, Humphrey, Gregory C., Toronczak, Julia, Schwartz, Tara, Nguyen, Dominic, Ackermann, Gail, D’Onofrio, Anthony, Strathdee, Steffanie A., Schooley, Robert T., Dorrestein, Pieter C., Knight, Rob, Aslam, Saima
Julkaisussa Microbiome (2021)

Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

Tekijä Quinn, Robert A., Adem, Sandeep, Mills, Robert H., Comstock, William, DeRight Goldasich, Lindsay, Humphrey, Gregory, Aksenov, Alexander A., Melnik, Alexei V., da Silva, Ricardo, Ackermann, Gail, Bandeira, Nuno, Gonzalez, David J., Conrad, Doug, O’Donoghue, Anthony J., Knight, Rob, Dorrestein, Pieter C.
Julkaisussa Microbiome (2019)