Spectral Library Generating Function for Assessing Spectrum-Spectrum Match Significance

par Wang, Mingxun, Bandeira, Nuno
Publié 2013

Therapy for advanced cholangiocarcinoma: Current knowledge and future potential

par Wang, Mingxun, Chen, Ziyan, Guo, Pengyi, Wang, Yi, Chen, Gang
Publié dans J Cell Mol Med (2020)

Assembling the Community-Scale Discoverable Human Proteome

par Wang, Mingxun, Wang, Jian, Carver, Jeremy, Pullman, Benjamin S., Cha, Seong Won, Bandeira, Nuno
Publié dans Cell Syst (2018)

Significance estimation for large scale metabolomics annotations by spectral matching

par Scheubert, Kerstin, Hufsky, Franziska, Petras, Daniel, Wang, Mingxun, Nothias, Louis-Félix, Dührkop, Kai, Bandeira, Nuno, Dorrestein, Pieter C., Böcker, Sebastian
Publié dans Nat Commun (2017)

Whole cell MALDI fingerprinting is a robust tool for differential profiling of two component mammalian cell mixtures

par Petukhova, Valentina Z., Young, Alexandria N., Wang, Jian, Wang, Mingxun, Ladanyi, Andras, Kothari, Rajul, Burdette, Joanna E., Sanchez, Laura M.
Publié dans J Am Soc Mass Spectrom (2018)

Detection of Ovarian Cancer Using Samples Sourced from the Vaginal Microenvironment

par Galey, Melissa M., Young, Alexandria N., Petukhova, Valentina Z., Wang, Mingxun, Wang, Jian, Salvi, Amrita, Russo, Angela, Burdette, Joanna E., Sanchez, Laura M.
Publié dans J Proteome Res (2019)

Lifestyle chemistries from phones for individual profiling

par Bouslimani, Amina, Melnik, Alexey V., Xu, Zhenjiang, Amir, Amnon, da Silva, Ricardo R., Wang, Mingxun, Bandeira, Nuno, Alexandrov, Theodore, Knight, Rob, Dorrestein, Pieter C.
Publié dans Proc Natl Acad Sci U S A (2016)

Molecular Networking and Pattern-Based Genome Mining Improves discovery of biosynthetic gene clusters and their products from Salinispora species

par Duncan, Katherine R., Crüsemann, Max, Lechner, Anna, Sarkar, Anindita, Li, Jie, Ziemert, Nadine, Wang, Mingxun, Bandeira, Nuno, Moore, Bradley S., Dorrestein, Pieter C., Jensen, Paul R.
Publié dans Chem Biol (2015)

Fungal–bacterial interaction selects for quorum sensing mutants with increased production of natural antifungal compounds

par Albarracín Orio, Andrea G., Petras, Daniel, Tobares, Romina A., Aksenov, Alexander A., Wang, Mingxun, Juncosa, Florencia, Sayago, Pamela, Moyano, Alejandro J., Dorrestein, Pieter C., Smania, Andrea M.
Publié dans Commun Biol (2020)

Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater

par Petras, Daniel, Minich, Jeremiah J., Cancelada, Lucia B., Torres, Ralph R., Kunselman, Emily, Wang, Mingxun, White, Margot E., Allen, Eric E., Prather, Kimberly A., Aluwihare, Lihini I., Dorrestein, Pieter C.
Publié dans Chemosphere (2021)

Automated Genome Mining of Ribosomal Peptide Natural Products

par Mohimani, Hosein, Kersten, Roland D., Liu, Wei-Ting, Wang, Mingxun, Purvine, Samuel O., Wu, Si, Brewer, Heather M., Pasa-Tolic, Ljiljana, Bandeira, Nuno, Moore, Bradley S., Pevzner, Pavel A., Dorrestein, Pieter C.
Publié 2014

MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools

par Ernst, Madeleine, Kang, Kyo Bin, Caraballo-Rodríguez, Andrés Mauricio, Nothias, Louis-Felix, Wandy, Joe, Chen, Christopher, Wang, Mingxun, Rogers, Simon, Medema, Marnix H., Dorrestein, Pieter C., van der Hooft, Justin J.J.
Publié dans Metabolites (2019)

The prognostic value of sarcopenia combined with preoperative fibrinogen–albumin ratio in patients with intrahepatic cholangiocarcinoma after surgery: A multicenter, prospective st...

par Yu, Haitao, Wang, Mingxun, Wang, Yi, Yang, Jinhuan, Deng, Liming, Bao, Wenming, He, Bangjie, Lin, Zixia, Chen, Ziyan, Chen, Kaiyu, Zhang, Baofu, Liu, Fangting, Yu, Zhengping, Ye, Longyun, Jin, Bin, Chen, Gang
Publié dans Cancer Med (2021)

Propagating annotations of molecular networks using in silico fragmentation

par da Silva, Ricardo R., Wang, Mingxun, Nothias, Louis-Félix, van der Hooft, Justin J. J., Caraballo-Rodríguez, Andrés Mauricio, Fox, Evan, Balunas, Marcy J., Klassen, Jonathan L., Lopes, Norberto Peporine, Dorrestein, Pieter C.
Publié dans PLoS Comput Biol (2018)

Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae

par Luzzatto-Knaan, Tal, Garg, Neha, Wang, Mingxun, Glukhov, Evgenia, Peng, Yao, Ackermann, Gail, Amir, Amnon, Duggan, Brendan M, Ryazanov, Sergey, Gerwick, Lena, Knight, Rob, Alexandrov, Theodore, Bandeira, Nuno, Gerwick, William H, Dorrestein, Pieter C
Publié dans eLife (2017)

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

par Deutsch, Eric W., Csordas, Attila, Sun, Zhi, Jarnuczak, Andrew, Perez-Riverol, Yasset, Ternent, Tobias, Campbell, David S., Bernal-Llinares, Manuel, Okuda, Shujiro, Kawano, Shin, Moritz, Robert L., Carver, Jeremy J., Wang, Mingxun, Ishihama, Yasushi, Bandeira, Nuno, Hermjakob, Henning, Vizcaíno, Juan Antonio
Publié dans Nucleic Acids Res (2017)

A Convolutional Neural Network-based approach for the Rapid Annotation of Molecularly Diverse Natural Products

par Reher, Raphael, Kim, Hyun Woo, Zhang, Chen, Mao, Huanru Henry, Wang, Mingxun, Nothias, Louis-Félix, Caraballo-Rodriguez, Andres Mauricio, Glukhov, Evgenia, Teke, Bahar, Leao, Tiago, Alexander, Kelsey L., Duggan, Brendan M., Van Everbroeck, Ezra L., Dorrestein, Pieter C., Cottrell, Garrison W., Gerwick, William H.
Publié dans J Am Chem Soc (2020)

Molecular cartography of the human skin surface in 3D

par Bouslimani, Amina, Porto, Carla, Rath, Christopher M., Wang, Mingxun, Guo, Yurong, Gonzalez, Antonio, Berg-Lyon, Donna, Ackermann, Gail, Moeller Christensen, Gitte Julie, Nakatsuji, Teruaki, Zhang, Lingjuan, Borkowski, Andrew W., Meehan, Michael J., Dorrestein, Kathleen, Gallo, Richard L., Bandeira, Nuno, Knight, Rob, Alexandrov, Theodore, Dorrestein, Pieter C.
Publié dans Proc Natl Acad Sci U S A (2015)

Three dimensional microbiome and metabolome cartography of a diseased human lung

par Garg, Neha, Wang, Mingxun, Hyde, Embriette, da Silva, Ricardo R., Melnik, Alexey V., Protsyuk, Ivan, Bouslimani, Amina, Lim, Yan Wei, Wong, Richard, Humphrey, Greg, Ackermann, Gail, Spivey, Timothy, Brouha, Sharon S., Bandeira, Nuno, Lin, Grace Y., Rohwer, Forest, Conrad, Douglas J., Alexandrov, Theodore, Knight, Rob, Dorrestein, Pieter C.
Publié dans Cell Host Microbe (2017)

Learning accurate representations of microbe-metabolite interactions

par Morton, James T., Aksenov, Alexander A., Nothias, Louis Felix, Foulds, James R., Quinn, Robert A., Badri, Michelle H., Swenson, Tami L., Van Goethem, Marc W., Northen, Trent R., Vazquez-Baeza, Yoshiki, Wang, Mingxun, Bokulich, Nicholas A., Watters, Aaron, Song, Se Jin, Bonneau, Richard, Dorrestein, Pieter C., Knight, Rob
Publié dans Nat Methods (2019)