Elucidation of the evolutionary expansion of phosphorylation signaling networks using comparative phosphomotif analysis

Por Yoshizaki, Hisayoshi, Okuda, Shujiro
Publicado em 2014

Large-scale analysis of the evolutionary histories of phosphorylation motifs in the human genome

Por Yoshizaki, Hisayoshi, Okuda, Shujiro
Publicado no Gigascience (2015)

Novel gene fusions found in cervical cancer

Por Ling, Yiwei, Okuda, Shujiro
Publicado no EBioMedicine (2018)

Knowledge base toward understanding actionable alterations and realizing precision oncology

Por Takeuchi, Shiho, Okuda, Shujiro
Publicado no Int J Clin Oncol (2018)

Evolutionary analysis of proline-directed phosphorylation sites in the mammalian growth cone identified using phosphoproteomics

Por Igarashi, Michihiro, Okuda, Shujiro
Publicado no Mol Brain (2019)

ODB: a database for operon organizations, 2011 update

Por Okuda, Shujiro, Yoshizawa, Akiyasu C.
Publicado em 2011

The Human Gut Microbiome is Structured to Optimize Molecular Interaction Networks

Por Ling, Yiwei, Watanabe, Yu, Okuda, Shujiro
Publicado no Comput Struct Biotechnol J (2019)

Electrophoretic Mobility of Bacillus subtilis Knockout Mutants with and without Flagella

Por Okuda, Shujiro, Igarashi, Ryosuke, Kusui, Yusuke, Kasahara, Yasuhiro, Morisaki, Hisao
Publicado em 2003

ODB: a database of operons accumulating known operons across multiple genomes

Por Okuda, Shujiro, Katayama, Toshiaki, Kawashima, Shuichi, Goto, Susumu, Kanehisa, Minoru
Publicado em 2006

Direct Observation and Analysis of Bacterial Growth on an Antimicrobial Surface

Por Yamada, Hiroyuki, Takahashi, Nobuyuki, Okuda, Shujiro, Tsuchiya, Yuki, Morisaki, Hisao
Publicado em 2010

iPath2.0: interactive pathway explorer

Por Yamada, Takuji, Letunic, Ivica, Okuda, Shujiro, Kanehisa, Minoru, Bork, Peer
Publicado em 2011

KAAS: an automatic genome annotation and pathway reconstruction server

Por Moriya, Yuki, Itoh, Masumi, Okuda, Shujiro, Yoshizawa, Akiyasu C., Kanehisa, Minoru
Publicado em 2007

Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli

Por Okuda, Shujiro, Kawashima, Shuichi, Kobayashi, Kazuo, Ogasawara, Naotake, Kanehisa, Minoru, Goto, Susumu
Publicado em 2007

Enhanced Translocation and Growth of Rhodococcus erythropolis PR4 in the Alkane Phase of Aqueous-Alkane Two Phase Cultures Were Mediated by GroEL2 Overexpression

Por Takihara, Hayato, Ogihara, Jun, Yoshida, Takao, Okuda, Shujiro, Nakajima, Mutsuyasu, Iwabuchi, Noriyuki, Sunairi, Michio
Publicado no Microbes Environ (2014)

Next generation sequencing‐based gene panel tests for the management of solid tumors

Por Nagahashi, Masayuki, Shimada, Yoshifumi, Ichikawa, Hiroshi, Kameyama, Hitoshi, Takabe, Kazuaki, Okuda, Shujiro, Wakai, Toshifumi
Publicado no Cancer Sci (2018)

Open Agile text mining for bioinformatics: the PubAnnotation ecosystem

Por Kim, Jin-Dong, Wang, Yue, Fujiwara, Toyofumi, Okuda, Shujiro, Callahan, Tiffany J, Cohen, K Bretonnel
Publicado no Bioinformatics (2019)

KEGG Atlas mapping for global analysis of metabolic pathways

Por Okuda, Shujiro, Yamada, Takuji, Hamajima, Masami, Itoh, Masumi, Katayama, Toshiaki, Bork, Peer, Goto, Susumu, Kanehisa, Minoru
Publicado em 2008

RNA Sequencing Revealed Numerous Polyketide Synthase Genes in the Harmful Dinoflagellate Karenia mikimotoi

Por Kimura, Kei, Okuda, Shujiro, Nakayama, Kei, Shikata, Tomoyuki, Takahashi, Fumio, Yamaguchi, Haruo, Skamoto, Setsuko, Yamaguchi, Mineo, Tomaru, Yuji
Publicado no PLoS One (2015)

Novel MXD4–NUTM1 fusion transcript identified in primary ovarian undifferentiated small round cell sarcoma

Por Tamura, Ryo, Nakaoka, Hirofumi, Yoshihara, Kosuke, Mori, Yutaro, Yachida, Nozomi, Nishikawa, Nobumichi, Motoyama, Teiichi, Okuda, Shujiro, Inoue, Ituro, Enomoto, Takayuki
Publicado no Genes Chromosomes Cancer (2018)

KEGG for linking genomes to life and the environment

Por Kanehisa, Minoru, Araki, Michihiro, Goto, Susumu, Hattori, Masahiro, Hirakawa, Mika, Itoh, Masumi, Katayama, Toshiaki, Kawashima, Shuichi, Okuda, Shujiro, Tokimatsu, Toshiaki, Yamanishi, Yoshihiro
Publicado em 2008